Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1455 127 3e-23 seq111 114 2e-19 seq23602 96.9 5e-14 seq51 96.9 5e-14 seq352 93.3 6e-13 seq276 87.8 3e-11 >seq1455 Length=5280 Score = 127 bits (140), Expect = 3e-23 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| ||| |||||||||||| |||| | ||| ||| |||| || Sbjct 3380 ATCTACAAGGTCCTCCGTCAGGTGCACCCCGACACCGGT-----ATC-TCCTCCAAGGCC 3327 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||| || || ||||||||||| | || ||||| | | | ||| || | Sbjct 3326 ATGTCAATCATGAATTCCTTCGTCAACGACATCTTTGAGCGCATTGCCGCTGAGTCCAGC 3267 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | || ||| |||||| || ||| || | || |||||||| || || Sbjct 3266 CGCCTCGCTCACTACAATAAGCGCTCGACCATCACCAGCAGAGAAATCCAGACTGCTGTC 3207 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || | | | || ||| |||||| ||||||||| ||||||||||| Sbjct 3206 CGTCTTCTGCTTCCTGGTGAATTGGCCAAGCACGCCGTTTCCGAGGGCAC 3157 >seq111 Length=1475026 Score = 114 bits (126), Expect = 2e-19 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| ||| |||||||||||| |||| | ||| ||| ||| || Sbjct 127301 ATCTACAAGGTCCTCCGTCAGGTGCACCCCGACACCGGT-----ATC-TCCTCGAAGGCC 127354 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||| || || ||||||||||| | || || || | | | ||| || | Sbjct 127355 ATGTCAATCATGAATTCCTTCGTCAACGACATCTTTGAGCGTATTGCCGCTGAGTCCAGC 127414 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | || ||| |||||| || ||| || | || |||||||| || || Sbjct 127415 CGCCTCGCTCACTACAATAAGCGCTCGACCATCACCAGCAGAGAAATCCAGACTGCTGTC 127474 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || | | | || ||| |||||| |||||||| ||||||||||| Sbjct 127475 CGTCTTCTGCTTCCTGGTGAATTGGCCAAACACGCCGTTTCCGAGGGCAC 127524 >seq23602 Length=318 Score = 96.9 bits (106), Expect = 5e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||| |||||||||||||| || |||||||| |||| || || | ||||| Sbjct 315 AAGGCGATGTCAATCATGAACTCGTTCGTGAACGACATTTTCGAGCGTATTGCTGCCGAG 256 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 | | || || |||| || ||||||||| |||||| | | ||||||||||| Sbjct 255 TCTAGCCGTCTTGCGCACTACAACAAGCGGTCTACGATCACTAGCAGAGAGATCCAGACT 196 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| || ||| | ||| ||| || || || | ||| || || || ||||| || Sbjct 195 GCCGTTCGTCTGCTTTTGCCCGGTGAGCTTGCAAAGCATGCGGTTTCTGAGGGGAC 140 >seq51 Length=2144829 Score = 96.9 bits (106), Expect = 5e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||| |||||||||||||| || |||||||| |||| || || | ||||| Sbjct 2135391 AAGGCGATGTCAATCATGAACTCGTTCGTGAACGACATTTTCGAGCGTATTGCTGCCGAG 2135450 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 | | || || |||| || ||||||||| |||||| | | ||||||||||| Sbjct 2135451 TCTAGCCGTCTTGCGCACTACAACAAGCGGTCTACGATCACTAGCAGAGAGATCCAGACT 2135510 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| || ||| | ||| ||| || || || | ||| || || || ||||| || Sbjct 2135511 GCCGTTCGTCTGCTTTTGCCCGGTGAGCTTGCAAAGCATGCGGTTTCTGAGGGGAC 2135566 Score = 93.3 bits (102), Expect = 6e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||| |||||||| ||||| || |||||||| |||| || || | ||||| Sbjct 2122652 AAGGCGATGTCAATCATGAATTCGTTCGTGAACGACATTTTCGAGCGTATTGCTGCCGAG 2122711 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 | | || || |||| || ||||||||| |||||| | | ||||||||||| Sbjct 2122712 TCTAGCCGTCTTGCGCACTACAACAAGCGGTCTACGATCACTAGCAGAGAGATCCAGACT 2122771 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| || ||| | ||| ||| || || || | ||| || || || ||||| || Sbjct 2122772 GCCGTTCGTCTGCTTTTGCCCGGTGAGCTTGCAAAGCATGCGGTTTCTGAGGGGAC 2122827 >seq352 Length=526801 Score = 93.3 bits (102), Expect = 6e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||| |||||||| ||||| || |||||||| |||| || || | ||||| Sbjct 522460 AAGGCGATGTCAATCATGAATTCGTTCGTGAACGACATTTTCGAGCGTATTGCTGCCGAG 522401 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 | | || || |||| || ||||||||| |||||| | | ||||||||||| Sbjct 522400 TCTAGCCGTCTTGCGCACTACAACAAGCGGTCTACGATCACTAGCAGAGAGATCCAGACT 522341 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| || ||| | ||| ||| || || || | ||| || || || ||||| || Sbjct 522340 GCCGTTCGTCTGCTTTTGCCCGGTGAGCTTGCAAAGCATGCGGTTTCTGAGGGGAC 522285 >seq276 Length=693516 Score = 87.8 bits (96), Expect = 3e-11 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 1456173 TTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTC 1456231 ||||| ||||| | || | |||||| || ||||||||||| || ||||| ||||| ||| Sbjct 676781 TTTGCGGAGCGTTTAGTTGCCTTTGCTGCAGTCGAGGGCATTTTCTTCTCTGGCAGCTTC 676722 Query 1456232 TGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGA 1456291 ||| || |||||||| || || |||||| | ||||| || || ||| || || || Sbjct 676721 GCCGCAATATTTTGGCTGAAAAAACGCGGCTTGATGCCTGG-GTTAACCTTCAGTAATGA 676663 Query 1456292 ATTTATCAGTCGCGACGAAG 1456311 | | |||||| | || |||| Sbjct 676662 ACTGATCAGTAGAGATGAAG 676643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7173739389206992