Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq190 122 9e-23 seq168 109 6e-19 seq46 109 6e-19 seq666 107 2e-18 >seq190 Length=1055212 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || |||||||||| || || || || |||||||| || ||||||||||| || | Sbjct 796630 CCACCCCTGAGTCGCAGGACCAGATGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAA 796571 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || ||||| || || || |||||||| ||||| ||||| || || Sbjct 796570 AGAGTACGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAATCGCTGTTGATCTGGAGGG 796511 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || |||||||| || |||||| || | || || |||| ||| || Sbjct 796510 ATCCCCTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGCTTCAACC 796451 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || |||||||| || || || | || || ||||| || ||||| || Sbjct 796450 TCAAGTGTAATGGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 796401 >seq168 Length=1129759 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || | |||||| ||||| ||||| ||||||||||| || | ||| | Sbjct 773900 AGGCGCAAAACCAAGTGTAGAGTGGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGT 773959 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || ||||| |||||||| ||||||||||| || ||||| ||||| || |||||||| Sbjct 773960 CCATCTTCGAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCC 774019 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || || || || | || ||| | ||| || || || || Sbjct 774020 TTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTG 774079 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | ||| || ||||| || ||||| Sbjct 774080 ATCGTCTTCCCAGTAAGAGTCTTCACGAATATCTGCAT 774117 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| || || || |||||||| || || |||||||| || | || || Sbjct 774128 AGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGA 774187 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || || |||||||| ||||||||||| || ||||| ||||| || |||||||| Sbjct 774188 CCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCC 774247 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || || || || | || ||| | ||| || || || ||| Sbjct 774248 TTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTA 774307 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| | || || ||||| || ||||| Sbjct 774308 ATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774345 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| || || || |||||||| || || |||||||| || | || || Sbjct 774356 AGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGA 774415 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || || |||||||| ||||||||||| || ||||| ||||| || |||||||| Sbjct 774416 CCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCC 774475 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || || || || | || ||| | ||| || || || ||| Sbjct 774476 TTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTA 774535 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| | || || ||||| || ||||| Sbjct 774536 ATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774573 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| || || || |||||||| || || |||||||| || | || || Sbjct 774584 AGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGA 774643 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || || |||||||| ||||||||||| || ||||| ||||| || |||||||| Sbjct 774644 CCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCC 774703 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || || || || | || ||| | ||| || || || ||| Sbjct 774704 TTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTA 774763 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| | || || ||||| || ||||| Sbjct 774764 ATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774801 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| || || || |||||||| || || |||||||| || | || || Sbjct 774812 AGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGA 774871 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || || |||||||| ||||||||||| || ||||| ||||| || |||||||| Sbjct 774872 CCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCC 774931 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || || || || | || ||| | ||| || || || ||| Sbjct 774932 TTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTA 774991 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| | || || ||||| || ||||| Sbjct 774992 ATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 775029 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || || | ||| ||||| || || || || || || ||||||||||| | |||| || | Sbjct 735854 AGGCGAAGCACCAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAAC-GTACG 735912 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| || | ||||||||| || ||||| | || ||||| || || || |||||||| Sbjct 735913 GCCGTCCTCCAACTGTTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTC 735972 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || |||||||| || || || || | |||||| | || || || ||||| Sbjct 735973 CTTATCTTGAATCTTCGCCTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCAAGAGT 736032 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| | || || ||||| || |||||| || Sbjct 736033 GATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATTGTG 736075 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| || || || |||||||| || || |||||||| || | || || Sbjct 775040 AGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGA 775099 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || || |||||||| ||||||||||| || ||||| ||||| || |||||||| Sbjct 775100 CCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCC 775159 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || || || || | || ||| | ||| || || || || Sbjct 775160 TTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTG 775219 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || || || | ||| || ||||| || |||||| Sbjct 775220 ATCGTCTTCCCAGTAAGAGTCTTCACGAAGATCTGCATT 775258 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || ||||| || | ||| | || || || || || ||||||||||| | ||| || | Sbjct 735626 AGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGACAA-TGTACG 735684 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | ||| || | || ||||| || ||||| | || ||||| || || || |||||||| Sbjct 735685 ACCGTCCTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTC 735744 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || |||||||| || || || || | ||||||| | || || ||||| || Sbjct 735745 CTTATCTTGAATCTTCGCCTTCACGTTCTCAATTGTGTCGCTAGCCTCAACCTCGAGGGT 735804 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || | ||||| || || |||||||| Sbjct 735805 GATCGTTTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 735843 >seq46 Length=2247445 Score = 109 bits (120), Expect = 6e-19 Identities = 120/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 8247 TCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAA 8306 ||| | ||||||||| | |||| ||||||||||||||||||||||||| || ||| Sbjct 181461 TCAGATCGAAACCGGAACTCCGTTCATGCTGTACAAAGACGCTTGCAACAGGAAGTCCAA 181402 Query 8307 TCAA-AGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACA 8365 ||| |||| | |||| |||||| | || || || ||||| |||| ||||| |||| | Sbjct 181401 TCACCAGCATC-TGGGAACCATTCGGTGTAGTAACCTGTGTACTGAGATTGTTGAGTATA 181343 Query 8366 GCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTC 8402 || |||| || ||| || ||||||||||| || || Sbjct 181342 GCTCGCCGGATGAAACTGCAGTTTGCAATCTCGCTTC 181306 >seq666 Length=114481 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || ||||||||||||||||||||||| || | ||| || ||| || | ||| Sbjct 72266 TGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGACCGTCTTCCAACTGC 72207 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || |||||||||||||||||||||||||| || || ||||| || || |||||||| || Sbjct 72206 TTACCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTATCTTGAATCTT 72148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505131701264320