Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq276 116 5e-21 seq46 96.9 5e-15 >seq276 Length=693516 Score = 116 bits (128), Expect = 5e-21 Identities = 247/366 (67%), Gaps = 2/366 (1%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||| | ||| || || || | || ||||||||||||||| ||||| |||||||| Sbjct 676921 ATCTTTGATATACGTGTCAATCAGAAGTGAATACATTTCTGAATGTATGTTCTCAATCGC 676980 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 ||||| | ||||||||||| | | || | || ||| || || || || | || Sbjct 676981 GATCTGCATCCCGTAAAAACACCGAACCTCCGGAACTTGAACTTCCTGACTGAAACGCTC 677040 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 ||| ||| || |||||||||||| || || ||||| ||||| || |||| | || Sbjct 677041 GACCAGATTCTCTAGCACTATTCCATCGCTTGCAGCAAAGAATGCTAACACATATGAGAT 677100 Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTAC 40116 || | || || | | ||| ||| | | | ||| || || | ||| || Sbjct 677101 GAAGTGACGCTCGCCGACCTTGAGACTATCCCAATGACCAAAATCCTTGGAGAGATCAAC 677160 Query 40117 TTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATA 40176 |||||| | ||||||||||| || |||| || || || | | ||| | ||| | || Sbjct 677161 CTCTTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGCCAAACATCGTGGTA 677220 Query 40177 TTGTATTGGAAAAATAACAAATCTATTTGGATTT-TTTGCAAGGATGGGTTCCATAACTA 40235 ||| || || || | |||||||| || || ||| || ||| | ||||||| ||| Sbjct 677221 TTGGATGGGGAATAGAACAAATCGATGCGGGTTTGGTTTCAA-CAGAGGTTCCAGTTCTA 677279 Query 40236 AATCAG 40241 | |||| Sbjct 677280 ACTCAG 677285 Score = 107 bits (118), Expect = 3e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || || || ||||||||||| || | ||| ||| || || | Sbjct 676620 GCAGGCGAAGTCGCAGTGCAGACCTTCATCTCTACTGATCAGTTCATTACTGAAGGTTAA 676679 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||| | || || ||||| ||||||||||| || || || ||||| ||||| Sbjct 676680 CCCAGGCATCAAGCCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAGAA 676739 Query 39736 GATGCCTTCTACTGCTGCAAATGCAAC 39762 ||||| || ||||| ||||| ||||| Sbjct 676740 AATGCCCTCGACTGCAGCAAAGGCAAC 676766 >seq46 Length=2247445 Score = 96.9 bits (106), Expect = 5e-15 Identities = 195/287 (68%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || ||||| || ||||| |||| || || |||||||| | |||| ||| | || | Sbjct 183254 TCAAATTCCTCACCCCACTTATCAGGTAAACCTGGACATTCGTGTGGATCCATGAGTGTC 183313 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AA 69635 ||| | |||| ||| |||||| ||| || | ||| || ||||| || || ||| || Sbjct 183314 CACTCCTCATTGGCCTCCACTCGTCGCATGAAGATATCCGGTATCCAGAGGGC-ATAGAA 183372 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 | ||| | | | ||||||| || ||||||||| | || | |||| | Sbjct 183373 CAAATCCCGACCACGAATTTCTTCGGCGCCAGTATTTTTTCGCATTTCAATGAACTGGAG 183432 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCC 69755 | || | |||||| ||||| || || | || | | || || ||||||||||| || Sbjct 183433 GACGTCCGGATGCCACGGTTCCAGGTAGACGGCGAAAGCACCGGGGCGTTTATTTCCACC 183492 Query 69756 CTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAA 69802 ||| || ||||| | |||||||||||| | || | || ||| |||| Sbjct 183493 CTGGTCGATGTAGCGAGCAGTGTTATTAAACACACGCAACATTGGAA 183539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686546318226240