Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq276 102 6e-17 >seq276 Length=693516 Score = 102 bits (112), Expect = 6e-17 Identities = 409/645 (63%), Gaps = 48/645 (7%) Strand=Plus/Minus Query 43687 AAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAA 43746 ||| ||| | | ||||| | || || || ||||| || || | ||||| | || || Sbjct 677254 AAACCCGCATCGATTTGTTCTATTCCCCATCCAATACCACGATGTTTGGCAGTTTTATAA 677195 Query 43747 AAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACA 43806 |||||| || || |||||||| | ||||| |||||| | | || || || | || Sbjct 677194 GAAAGCAGTCGCATCGTTTTGGACCGTTGAAGAGGTTGATCTCTCCAAGGATTTTGGTCA 677135 Query 43807 TTGG-ATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTG 43865 |||| || | | || | || || || || || | || || || || |||| Sbjct 677134 TTGGGATAGTCTCAAGGTCGGC-GAGCGTCACTTCATCTCATATGTGTTAGCATTCTTTG 677076 Query 43866 CTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAAT 43925 |||| ||||| || ||||| || ||| |||| || || || ||||||||| Sbjct 677075 CTGCAAGCGATGGAATAGTGCTAGAGAATCTGGTCGAGCGTTTCAGTCAGGAAGTTCAAG 677016 Query 43926 TACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAA 43985 | || || | || |||||||| ||| | || || || || || || || ||||| |||| Sbjct 677015 TTCCGGAGGTTCGGTGTTTTTACGGGATGCAGATCGCGATTGAGAACATACATTCAGAAA 676956 Query 43986 TGTACAGTCTTCTGATAGATACGTACATCAAAGATGG----GCACGAGAAG--------- 44032 |||| |||||||| || ||||| ||||||||| | ||| ||| Sbjct 676955 TGTATTCACTTCTGATTGACACGTATATCAAAGATCCAACAGAACGGTAAGGTTTCCGCT 676896 Query 44033 --------------------CATCGATT----GTTTAATGCGAT-AGAAAC--AGTACCT 44065 || ||||| ||| || || || || ||| || | | Sbjct 676895 TCTCCAATTGACTACTCTCGCAGCGATTTCCTGTTCAACGCCATCAGCAACCTAGAATGT 676836 Query 44066 GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT---TTT 44122 | | || || || | ||||| ||||| ||||| | | | ||| ||| Sbjct 676835 G---TCGCGCAGAAGGCGCAATGGGCGCTTAACTGGATTGGCGATACTCACTCTACGTTT 676779 Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 | || || | || || ||||| | || || ||||||||||| || || || || Sbjct 676778 GCGGAGCGTTTAGTTGCCTTTGCTGCAGTCGAGGGCATTTTCTTCTCTGGCAGCTTCGCC 676719 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 || ||||||||| | || ||||| || |||||||||||||| || || ||||| | Sbjct 676718 GCAATATTTTGGCTGAAAAAACGCGGCTTGATGCCTGGGTTAACCTTCAGTAATGAACTG 676659 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTA 44287 || ||| | |||||||| | || ||||| || || ||| ||||| Sbjct 676658 ATCAGTAGAGATGAAGGTCTGCACTGCGACTTCGCCTGCATGTTA 676614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397251505907080