Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq168 123 2e-23 seq666 98.7 6e-16 seq190 84.2 1e-11 >seq168 Length=1129759 Score = 123 bits (136), Expect = 2e-23 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||| |||||| || || || ||||| ||||| || || ||||| Sbjct 774128 AGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGA 774187 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||||||||| |||||||| || || || || ||||| || || | || ||| Sbjct 774188 CCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCC 774247 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 |||||| |||| || | || || | ||| || || | ||| || ||||| | || Sbjct 774248 TTGTCTTGGATC-TTCGCCTTCACATTCTCAATAGTATCGCTTGCT-TCAACTTCAAGGG 774305 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | ||||| |||||||| | || ||||| || ||||||||| Sbjct 774306 TAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 774346 Score = 123 bits (136), Expect = 2e-23 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||| |||||| || || || ||||| ||||| || || ||||| Sbjct 774356 AGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGA 774415 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||||||||| |||||||| || || || || ||||| || || | || ||| Sbjct 774416 CCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCC 774475 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 |||||| |||| || | || || | ||| || || | ||| || ||||| | || Sbjct 774476 TTGTCTTGGATC-TTCGCCTTCACATTCTCAATAGTATCGCTTGCT-TCAACTTCAAGGG 774533 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | ||||| |||||||| | || ||||| || ||||||||| Sbjct 774534 TAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 774574 Score = 123 bits (136), Expect = 2e-23 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||| |||||| || || || ||||| ||||| || || ||||| Sbjct 774584 AGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGA 774643 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||||||||| |||||||| || || || || ||||| || || | || ||| Sbjct 774644 CCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCC 774703 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 |||||| |||| || | || || | ||| || || | ||| || ||||| | || Sbjct 774704 TTGTCTTGGATC-TTCGCCTTCACATTCTCAATAGTATCGCTTGCT-TCAACTTCAAGGG 774761 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | ||||| |||||||| | || ||||| || ||||||||| Sbjct 774762 TAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 774802 Score = 123 bits (136), Expect = 2e-23 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||| |||||| || || || ||||| ||||| || || ||||| Sbjct 774812 AGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGA 774871 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||||||||| |||||||| || || || || ||||| || || | || ||| Sbjct 774872 CCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCC 774931 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 |||||| |||| || | || || | ||| || || | ||| || ||||| | || Sbjct 774932 TTGTCTTGGATC-TTCGCCTTCACATTCTCAATAGTATCGCTTGCT-TCAACTTCAAGGG 774989 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | ||||| |||||||| | || ||||| || ||||||||| Sbjct 774990 TAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 775030 Score = 113 bits (124), Expect = 3e-20 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||| |||||| || || || ||||| ||||| || || ||||| Sbjct 775040 AGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGA 775099 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||||||||| |||||||| || || || || ||||| || || | || ||| Sbjct 775100 CCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCC 775159 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 |||||| |||| || | || || | ||| || || | ||| || ||||| | || Sbjct 775160 TTGTCTTGGATC-TTCGCCTTCACATTCTCAATAGTATCGCTTGCT-TCAACTTCAAGGG 775217 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||||| || || || | || ||||| || |||||||| Sbjct 775218 TGATCGTCTTCCCAGTAAGAGTCTTCACGAAGATCTGCAT 775257 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| ||||| ||||| || | ||| ||| || || ||||| || || || Sbjct 735616 GCCACCACGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGA 735675 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||| || |||| || | ||| || ||||| || || | || || ||||| || || Sbjct 735676 CAATGTACGACCGTCCTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGG 735735 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCT-TCGCTCTCC 34656 | || ||||| ||| ||||| | || ||| | ||||||||| | || ||| Sbjct 735736 GATGCCTTCCTTATCTTGAATCTTC-GCCTTCACGTTCTCAATTGTGTCGCTAGC-CTCA 735793 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | ||| |||||||| || || | ||||||||||| || ||||| Sbjct 735794 ACCTCGAGGGTGATCGTTTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 735843 >seq666 Length=114481 Score = 98.7 bits (108), Expect = 6e-16 Identities = 118/159 (74%), Gaps = 5/159 (3%) Strand=Plus/Minus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 ||| | || |||||| |||||| |||||||||||||| ||||| || || || || | Sbjct 72279 ACGGATCATCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGACC 72220 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 |||||| | || ||||| ||||| || |||||||| || || || || | |||||||| Sbjct 72219 GTCTTCCAACTGCTTACCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTT 72160 Query 34611 GTCTGTGATCTTTTGTTTTAACGAT----AAAATTGTGT 34645 ||| ||| || | ||||||| | | |||||||| Sbjct 72159 ATCT-TGAATCTTGGCTTTAACGTTCTCAATAATTGTGT 72122 >seq190 Length=1055212 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || |||| |||| ||| || ||| || || |||||||| ||||| || Sbjct 796631 GCCACCCCTGAGTCGCAGGACCAGATGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGA 796572 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || |||| || || || || || || || || || |||||||| || || || Sbjct 796571 AAGAGTACGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAATCGCTGTTGATCTGGAGG 796512 Query 34599 CACTCCCTCCTTGTCTGTGATCTT 34622 | |||||||||||| ||||| Sbjct 796511 GATCCCCTCCTTGTCTTGAATCTT 796488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314567669260328