Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq168 156 4e-33 seq190 131 1e-25 seq666 105 6e-18 >seq168 Length=1129759 Score = 156 bits (172), Expect = 4e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||||||||| || || ||||| || || ||| | || || |||||||| ||| | Sbjct 774118 CATGCAGATATTCGTGAAGACTCTTACTGGGAAGACGATCACCCTTGAAGTTGAAGCAAG 774059 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || |||||||| |||||||| |||||||| || Sbjct 774058 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 773999 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || || || | |||||||||||| | ||||| | ||| | || |||||||| Sbjct 773998 GCAACGCTTGATTTTTGCCGGCAAACAACTCGAAGATGGACGTACCTTATCGGATTACAA 773939 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||| |||||||| || |||| ||||||||||| | || |||||| Sbjct 773938 CATTCAGAAGGAGTCCACTCTACACTTGGTTTTGCGCCTTCGTGGTGGC 773890 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||||||||| || || || |||||||| ||| | ||||| |||||||| ||| | Sbjct 774346 CATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAG 774287 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || |||||||| |||||||| |||||||| || Sbjct 774286 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 774227 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || || || | |||||||||||| | ||||| || || | || |||||||| Sbjct 774226 GCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAA 774167 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || || || || | ||| |||| | ||| |||| |||||||| Sbjct 774166 CATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGGCAT 774116 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||||||||| || || || |||||||| ||| | ||||| |||||||| ||| | Sbjct 774574 CATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAG 774515 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || |||||||| |||||||| |||||||| || Sbjct 774514 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 774455 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || || || | |||||||||||| | ||||| || || | || |||||||| Sbjct 774454 GCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAA 774395 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || || || || | ||| |||| | ||| |||| |||||||| Sbjct 774394 CATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGGCAT 774344 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||||||||| || || || |||||||| ||| | ||||| |||||||| ||| | Sbjct 774802 CATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAG 774743 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || |||||||| |||||||| |||||||| || Sbjct 774742 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 774683 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || || || | |||||||||||| | ||||| || || | || |||||||| Sbjct 774682 GCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAA 774623 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || || || || | ||| |||| | ||| |||| |||||||| Sbjct 774622 CATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGGCAT 774572 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||||||||| || || || |||||||| ||| | ||||| |||||||| ||| | Sbjct 775030 CATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAG 774971 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || |||||||| |||||||| |||||||| || Sbjct 774970 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 774911 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || || || | |||||||||||| | ||||| || || | || |||||||| Sbjct 774910 GCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAA 774851 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || || || || | ||| |||| | ||| |||| |||||||| Sbjct 774850 CATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGGCAT 774800 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| ||||| ||||| | || || || || || || | | Sbjct 735843 ATGCAAATCTTTGTGAAAACCCTGACTGGCAAAACGATCACCCTCGAGGTTGAGGCTAGC 735784 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || |||||||| || |||||||| ||||| || || Sbjct 735783 GACACAATTGAGAACGTGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAG 735724 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | ||||||||| |||||||| ||| || || | || || |||||| Sbjct 735723 CAACGCCTTATTTTCGCCGGCAAGCAATTGGAGGACGGTCGTACATTGTCTGACTACAAC 735664 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || ||||| || || || ||||||||||| | || |||||| Sbjct 735663 ATCCAGAAAGAGTCTACTTTGCACTTGGTTTTGCGCCTTCGTGGTGGC 735616 Score = 132 bits (146), Expect = 4e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 || |||||||| || || || ||||| || || ||| | || || |||||||| ||| | Sbjct 775260 GCAATGCAGATCTTCGTGAAGACTCTTACTGGGAAGACGATCACCCTTGAAGTTGAAGCA 775201 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 ||| | ||||||| || || || || |||||||| |||||||| |||||||| Sbjct 775200 AGCGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGAC 775141 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || || || || || | |||||||||||| | ||||| || || | || |||||| Sbjct 775140 CAGCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTAC 775081 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || || || | ||| |||| | ||| |||| |||||||| Sbjct 775080 AACATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGGCAT 775028 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || |||||||| || || | Sbjct 736071 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACTCTTGAGGTCGAGGCCAGT 736012 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || |||||||| || |||||||| ||||| || || Sbjct 736011 GACACAATTGAGAACGTGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAG 735952 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || || | || | |||||||||||| ||||| ||| | || |||| || || ||||| Sbjct 735951 CAACGCCTTATTTTCGCCGGCAAACAGTTGGAGGAC-GGCCGTACGTTGTCTGACTACAA 735893 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| || | || |||| | || | || ||||| || Sbjct 735892 CATCCAGAAAGAGTCTACTCTTCACCTGGTGCTTCGCCTTCGTGGTGGTAT 735842 >seq190 Length=1055212 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | ||||| ||||| || ||| |||| Sbjct 796404 ATGCAGATCTTCGTCAAGACACTCACGGGAAAGACCATTACACTTGAGGTTGAAGCGTCG 796463 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || ||||||||||| || || || || || |||||| Sbjct 796464 GATACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAGGAGGGGATCCCTCCAGATCAA 796523 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||| || || || |||| ||| | || |||| ||||||||| Sbjct 796524 CAGCGATTGATTTTCGCGGGAAAGCAGCTGGAGGACGGCCGTACTCTTTCTGATTACAAC 796583 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || ||| | ||| |||| |||| | |||||||||| Sbjct 796584 ATTCAGAAAGAATCCACCCTGCATCTGGTCCTGCGACTCAGGGGTGGCAT 796633 >seq666 Length=114481 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 27054 ATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGT 27113 ||||||| || ||| || |||||||| || || ||||| || || ||||| |||||| Sbjct 72130 ATTGAGAACGTTAAAGCCAAGATTCAAGATAAGGAGGGCATTCCTCCAGATCAGCAGCGT 72189 Query 27114 TTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAA 27173 || || | || || || || ||||||||| || || | || ||||||||||||||| Sbjct 72190 TTGATTTTTGCAGGTAAGCAGTTGGAAGACGGTCGCACTCTCTCTGATTACAACATTCAA 72249 Query 27174 AAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGG 27211 ||||| || || | |||||| | | |||||||| || Sbjct 72250 AAGGAATCCACTCTTCATTTGATGATCCGTTTGCGCGG 72287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434688893560320