Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq168 104 2e-17 >seq168 Length=1129759 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||| |||||||||||||| || || |||| || ||| | | Sbjct 774117 ATGCAGATATTCGTGAAGACTCTTACTGGGAAGACGATCACCCTTGAAGTTGAAGCAAGC 774058 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || || || || ||||| ||||| | || || | Sbjct 774057 GATACTATTGAGAAT--GTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACC 774000 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || ||||||||||| |||||| | || || | ||| | ||| || ||||||| Sbjct 773999 AGCAACGCTTGATTTTTGCCGGCAAACAACTCGAAGATGGACGTACCTTATCGGATTACA 773940 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||| || || ||| |||| | || ||||||||||| | ||||| ||| Sbjct 773939 ACATTCAGAAGGAGTCCACTCTACACTTGGTTTTGCGCCTTCGTGGTGGC 773890 Score = 98.7 bits (108), Expect = 7e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| | ||||| ||||| || |||||||| |||| || | ||||| || Sbjct 735729 GACCAGCAACGCCTTATTTTCGCCGGCAAGCAATTGGAGGACGGTCGTACATTGTCTGAC 735670 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| |||||| |||||||| ||||||||||| | ||||| ||| Sbjct 735669 TACAACATCCAGAAAGAGTCTACTTTGCACTTGGTTTTGCGCCTTCGTGGTGGC 735616 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || || ||||| |||||||||||||| || || |||| || ||| | Sbjct 775258 AATGCAGATCTTCGTGAAGACTCTTACTGGGAAGACGATCACCCTTGAAGTTGAAGCAAG 775199 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | || | ||| || || || || ||||| ||||| | || || Sbjct 775198 CGATACTATTGAGAAT--GTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGAC 775141 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| || ||||||||||| |||||| | || || | || | |||| |||||| Sbjct 775140 CAGCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTAC 775081 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| ||||| |||| | ||| |||| | ||| ||||||| ||| Sbjct 775080 AACATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGGC 775030 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| | || || |||||||| || ||||||||||| |||||| | || Sbjct 774252 GACAAGGAAGGCATCCCACCCGACCAGCAACGCTTGATTTTTGCCGGCAAACAACTTGAA 774193 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | |||| |||||||||||||| ||||| |||| | ||| |||| | Sbjct 774192 GATGGTCGAACTCTGTCTGATTACAACATCCAGAAAGAATCCACTCTTCATCTGGTGCTT 774133 Query 28003 CGTTTGCGTGGCGGC 28017 ||| ||||||| ||| Sbjct 774132 CGTCTGCGTGGTGGC 774118 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| | || || |||||||| || ||||||||||| |||||| | || Sbjct 774480 GACAAGGAAGGCATCCCACCCGACCAGCAACGCTTGATTTTTGCCGGCAAACAACTTGAA 774421 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | |||| |||||||||||||| ||||| |||| | ||| |||| | Sbjct 774420 GATGGTCGAACTCTGTCTGATTACAACATCCAGAAAGAATCCACTCTTCATCTGGTGCTT 774361 Query 28003 CGTTTGCGTGGCGGC 28017 ||| ||||||| ||| Sbjct 774360 CGTCTGCGTGGTGGC 774346 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| | || || |||||||| || ||||||||||| |||||| | || Sbjct 774708 GACAAGGAAGGCATCCCACCCGACCAGCAACGCTTGATTTTTGCCGGCAAACAACTTGAA 774649 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | |||| |||||||||||||| ||||| |||| | ||| |||| | Sbjct 774648 GATGGTCGAACTCTGTCTGATTACAACATCCAGAAAGAATCCACTCTTCATCTGGTGCTT 774589 Query 28003 CGTTTGCGTGGCGGC 28017 ||| ||||||| ||| Sbjct 774588 CGTCTGCGTGGTGGC 774574 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| | || || |||||||| || ||||||||||| |||||| | || Sbjct 774936 GACAAGGAAGGCATCCCACCCGACCAGCAACGCTTGATTTTTGCCGGCAAACAACTTGAA 774877 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | |||| |||||||||||||| ||||| |||| | ||| |||| | Sbjct 774876 GATGGTCGAACTCTGTCTGATTACAACATCCAGAAAGAATCCACTCTTCATCTGGTGCTT 774817 Query 28003 CGTTTGCGTGGCGGC 28017 ||| ||||||| ||| Sbjct 774816 CGTCTGCGTGGTGGC 774802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355679306126232