Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq168 136 9e-27 seq190 123 6e-23 >seq168 Length=1129759 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || |||||||||||||| |||| |||||||| | || ||||| |||||| Sbjct 775046 AGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCT 775105 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || || || || | ||||| |||||||| || || |||||||||||| Sbjct 775106 TCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 775165 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || || || || | ||| || || | ||||||||| Sbjct 775166 TGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTGATCGTC 775225 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || | ||| || | ||| | |||||| Sbjct 775226 TTCCCAGTAAGAGTCTTCACGAAGATCTGCATT 775258 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || |||||||||||||| |||| |||||||| | || ||||| |||||| Sbjct 774134 AGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCT 774193 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || || || || | ||||| |||||||| || || |||||||||||| Sbjct 774194 TCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 774253 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || || || || | ||| || || | || |||||| Sbjct 774254 TGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTC 774313 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||| || || | ||| | ||||| Sbjct 774314 TTACCGGTCAGGGTCTTCACGAATATCTGCAT 774345 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || |||||||||||||| |||| |||||||| | || ||||| |||||| Sbjct 774362 AGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCT 774421 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || || || || | ||||| |||||||| || || |||||||||||| Sbjct 774422 TCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 774481 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || || || || | ||| || || | || |||||| Sbjct 774482 TGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTC 774541 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||| || || | ||| | ||||| Sbjct 774542 TTACCGGTCAGGGTCTTCACGAATATCTGCAT 774573 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || |||||||||||||| |||| |||||||| | || ||||| |||||| Sbjct 774590 AGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCT 774649 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || || || || | ||||| |||||||| || || |||||||||||| Sbjct 774650 TCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 774709 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || || || || | ||| || || | || |||||| Sbjct 774710 TGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTC 774769 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||| || || | ||| | ||||| Sbjct 774770 TTACCGGTCAGGGTCTTCACGAATATCTGCAT 774801 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || |||||||||||||| |||| |||||||| | || ||||| |||||| Sbjct 774818 AGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCT 774877 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || || || || | ||||| |||||||| || || |||||||||||| Sbjct 774878 TCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 774937 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || || || || | ||| || || | || |||||| Sbjct 774938 TGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTC 774997 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||| || || | ||| | ||||| Sbjct 774998 TTACCGGTCAGGGTCTTCACGAATATCTGCAT 775029 Score = 123 bits (136), Expect = 6e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| ||||| || ||||| |||| ||||| || | ||| || Sbjct 735850 ACGAAGGCGAAGCACCAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAACGT 735909 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || | ||| || || ||||| ||||| ||||| ||||| || || || || Sbjct 735910 ACGGCCGTCCTCCAACTGTTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCC 735969 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||| ||||| |||||| || || ||||| || || || || | Sbjct 735970 TTCCTTATCTTGAATCTTCGCCTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCAAG 736029 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||||||||||| |||| || || | ||| | |||||| Sbjct 736030 AGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATT 736072 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| |||||||| || || || | |||||||| | || || Sbjct 773896 ACGAAGGCGCAAAACCAAGTGTAGAGTGGACTCCTTCTGAATGTTGTAATCCGATAAGGT 773955 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || || || || || || || | ||||| |||||||| || || || Sbjct 773956 ACGTCCATCTTCGAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCC 774015 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||||||| ||||||| || || || || | ||| || || | Sbjct 774016 TTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAG 774075 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || || | ||| || | ||| | ||||| Sbjct 774076 GGTGATCGTCTTCCCAGTAAGAGTCTTCACGAATATCTGCAT 774117 >seq190 Length=1055212 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 |||| |||||| || || || ||||||||||| || | |||||||| | | ||| | Sbjct 796621 AGTCGCAGGACCAGATGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAAAGAGTACGG 796562 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || ||||| || | ||| ||||| || || || || || ||| Sbjct 796561 CCGTCCTCCAGCTGCTTTCCCGCGAAAATCAATCGCTGTTGATCTGGAGGGATCCCCTCC 796502 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||| ||||| || ||| ||||||||| || || | ||| || || | || Sbjct 796501 TTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGCTTCAACCTCAAGTGTA 796442 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| ||||| | || || | ||| | ||||| || Sbjct 796441 ATGGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 796401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191886168817904