Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq276 131 2e-25 seq46 93.3 6e-14 >seq276 Length=693516 Score = 131 bits (144), Expect = 2e-25 Identities = 243/354 (69%), Gaps = 2/354 (1%) Strand=Plus/Plus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||| | || || || || | ||| ||||||||| || || || || ||||| || Sbjct 676921 ATCTTTGATATACGTGTCAATCAGAAGTGAATACATTTCTGAATGTATGTTCTCAATCGC 676980 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520 ||||| | ||||||||||| | | || | | || || ||| || || || || Sbjct 676981 GATCTGCATCCCGTAAAAACACCGAACCTCCGGAACTTGAACTTCCTGACTGAAACGCTC 677040 Query 48521 AGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAAT 48580 ||| |||||| ||||||||||| || |||||||| |||||||| |||| | || Sbjct 677041 GACCAGATTCTCTAGCACTATTCCATCGCTTGCAGCAAAGAATGCTAACACATATGAGAT 677100 Query 48581 AAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTAC 48640 || | ||| | | || ||| ||| | | | ||| || || | ||| || Sbjct 677101 GAAGTGACGCTCGCCGACCTTGAGACTATCCCAATGACCAAAATCCTTGGAGAGATCAAC 677160 Query 48641 TTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTA 48700 |||||| | |||||||| ||||| ||||||| ||||| | | ||| | ||| ||| Sbjct 677161 CTCTTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGCCAAACATCGTGGTA 677220 Query 48701 TTGGATTGGGAAAATAACAAATCTATTTGGATTT-TTTGCAAGGATAGGTTCCA 48753 |||||| ||||| | |||||||| || || ||| || ||| | |||||||| Sbjct 677221 TTGGATGGGGAATAGAACAAATCGATGCGGGTTTGGTTTCAA-CAGAGGTTCCA 677273 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 48139 AACATGCA----AAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194 |||||||| || || || || ||||||||||||||||| || | ||| ||| || Sbjct 676615 AACATGCAGGCGAAGTCGCAGTGCAGACCTTCATCTCTACTGATCAGTTCATTACTGAAG 676674 Query 48195 GTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAA 48254 || | || ||||| | || |||||||| |||||||||||||| ||||| ||||| Sbjct 676675 GTTAACCCAGGCATCAAGCCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAG 676734 Query 48255 AAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| || || || ||||| || Sbjct 676735 AAGAAAATGCCCTCGACTGCAGCAAAGGC 676763 >seq46 Length=2247445 Score = 93.3 bits (102), Expect = 6e-14 Identities = 192/286 (67%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| || ||||| |||| || || || ||||| | ||| ||| | || | Sbjct 183254 TCAAATTCCTCACCCCACTTATCAGGTAAACCTGGACATTCGTGTGGATCCATGAGTGTC 183313 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || || ||| ||| |||||| ||| |||| ||| |||||||| || ||| || Sbjct 183314 CACTCCTCATTGGCCTCCACTCGTCGCATGAAGATATCCGGTATCCAGAGGGCATAGAAC 183373 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 | ||| || | | |||||| || ||||| ||| | || | |||| | Sbjct 183374 AAATCCCGACCACGAATTTCTTCGGCGCCAGTATTTTTTCGCATTTCAATGAACTGGAGG 183433 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 | || | |||||| ||||| || || | || | | | || || |||||||| || ||| Sbjct 183434 ACGTCCGGATGCCACGGTTCCAGGTAGACGGCGAAAGCACCGGGGCGTTTATTTCCACCC 183493 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAA 78210 || || || || | || ||||||||| | || | ||||||||||| Sbjct 183494 TGGTCGATGTAGCGAGCAGTGTTATTAAACACACGCAACATTGGAA 183539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694302223274240