Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq276 131 2e-25 seq46 114 2e-20 >seq276 Length=693516 Score = 131 bits (144), Expect = 2e-25 Identities = 243/354 (69%), Gaps = 2/354 (1%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||| | ||| || || || | ||| ||||||||||||||| ||||| ||||| || Sbjct 676921 ATCTTTGATATACGTGTCAATCAGAAGTGAATACATTTCTGAATGTATGTTCTCAATCGC 676980 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 ||||| | ||||||||||| | | || | || || || || || || || || Sbjct 676981 GATCTGCATCCCGTAAAAACACCGAACCTCCGGAACTTGAACTTCCTGACTGAAACGCTC 677040 Query 47010 AGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAAT 47069 || |||||| |||||||||||| || |||||||| ||||| || |||| | || Sbjct 677041 GACCAGATTCTCTAGCACTATTCCATCGCTTGCAGCAAAGAATGCTAACACATATGAGAT 677100 Query 47070 AAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTAC 47129 || | || || | || ||| ||| | | | ||| || || | ||| || Sbjct 677101 GAAGTGACGCTCGCCGACCTTGAGACTATCCCAATGACCAAAATCCTTGGAGAGATCAAC 677160 Query 47130 TTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATA 47189 |||||| | ||||| || || || ||||||| ||||| | | ||| | ||| | || Sbjct 677161 CTCTTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGCCAAACATCGTGGTA 677220 Query 47190 TTGGATCGGAAAAATAACAAATCTATTTGGATTT-TTTGCAAGTATAGGTTCCA 47242 |||||| || || | |||||||| || || ||| || ||| | |||||||| Sbjct 677221 TTGGATGGGGAATAGAACAAATCGATGCGGGTTTGGTTTCAA-CAGAGGTTCCA 677273 Score = 93.3 bits (102), Expect = 6e-14 Identities = 112/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 46628 AACATGCA----AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 |||||||| || || || || || |||||||||||||| || | ||| ||| || Sbjct 676615 AACATGCAGGCGAAGTCGCAGTGCAGACCTTCATCTCTACTGATCAGTTCATTACTGAAG 676674 Query 46684 GTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAA 46743 || | ||||||||| | || || ||||| ||||||||||| || ||||| ||||| Sbjct 676675 GTTAACCCAGGCATCAAGCCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAG 676734 Query 46744 AAGAATATGCCTTCTACAGCCGCGAATGCGAC 46775 ||||| ||||| || || || || || || || Sbjct 676735 AAGAAAATGCCCTCGACTGCAGCAAAGGCAAC 676766 >seq46 Length=2247445 Score = 114 bits (126), Expect = 2e-20 Identities = 197/286 (69%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| || ||||| |||| ||||| |||||||| | ||| ||| | || | Sbjct 183254 TCAAATTCCTCACCCCACTTATCAGGTAAACCTGGACATTCGTGTGGATCCATGAGTGTC 183313 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 ||||| ||| ||| || ||| ||| |||| ||| |||||||| || ||| || Sbjct 183314 CACTCCTCATTGGCCTCCACTCGTCGCATGAAGATATCCGGTATCCAGAGGGCATAGAAC 183373 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 | ||| || | | |||||| || ||||| ||| | || | ||||| | Sbjct 183374 AAATCCCGACCACGAATTTCTTCGGCGCCAGTATTTTTTCGCATTTCAATGAACTGGAGG 183433 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 | || | |||||| ||||| || || | || | | |||| || |||||||| || ||| Sbjct 183434 ACGTCCGGATGCCACGGTTCCAGGTAGACGGCGAAAGCACCGGGGCGTTTATTTCCACCC 183493 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAA 76805 || || || || | |||||||||||| | || | ||||||||||| Sbjct 183494 TGGTCGATGTAGCGAGCAGTGTTATTAAACACACGCAACATTGGAA 183539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712558184517120