Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq168 129 1e-24 seq190 120 7e-22 >seq168 Length=1129759 Score = 129 bits (142), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||||||||||||||| ||||||||||| || | || || | || || Sbjct 735860 AGCACCAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAACGTACGGCCGTCC 735919 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| |||||||| ||||| | |||||||| | | ||| |||||||| ||| Sbjct 735920 TCCAACTGTTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCT 735979 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 ||||| || || || |||| | |||| ||| ||| || |||||||| || Sbjct 735980 TGAATCTTCGCCTTCACGTTCTCAATTGTGTC---ACTGGCCTCGACCTCAAGAGTGATC 736036 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || ||||||||||||| ||||||| Sbjct 736037 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATT 736072 Score = 129 bits (142), Expect = 1e-24 Identities = 162/217 (75%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||||||||| || ||||| |||||||||||||| | | ||||| |||||| Sbjct 775046 AGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCT 775105 Query 151953 TCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || ||| ||||| || || |||| | |||||||| | | ||| |||||||| || Sbjct 775106 TCAAGTTGTTTGCCGGCAAAAATCAAGCGT-TGCTGGTCGGGTGGGATGCCTTCCTTGTC 775164 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTAAT 152068 ||| || || || ||| |||| | | || || || || |||||||| || || Sbjct 775165 TTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTG--CT-TCAACTTCAAGGGTGAT 775221 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || |||||||||||||||| ||||||| Sbjct 775222 CGTCTTCCCAGTAAGAGTCTTCACGAAGATCTGCATT 775258 Score = 122 bits (134), Expect = 2e-22 Identities = 160/216 (74%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||||||||| || ||||| |||||||||||||| | | ||||| |||||| Sbjct 774134 AGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCT 774193 Query 151953 TCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || ||| ||||| || || |||| | |||||||| | | ||| |||||||| || Sbjct 774194 TCAAGTTGTTTGCCGGCAAAAATCAAGCGT-TGCTGGTCGGGTGGGATGCCTTCCTTGTC 774252 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTAAT 152068 ||| || || || ||| |||| | | || || || || |||||||| ||||| Sbjct 774253 TTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTG--CT-TCAACTTCAAGGGTAAT 774309 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||||||||| | |||||| Sbjct 774310 CGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774345 Score = 122 bits (134), Expect = 2e-22 Identities = 160/216 (74%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||||||||| || ||||| |||||||||||||| | | ||||| |||||| Sbjct 774362 AGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCT 774421 Query 151953 TCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || ||| ||||| || || |||| | |||||||| | | ||| |||||||| || Sbjct 774422 TCAAGTTGTTTGCCGGCAAAAATCAAGCGT-TGCTGGTCGGGTGGGATGCCTTCCTTGTC 774480 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTAAT 152068 ||| || || || ||| |||| | | || || || || |||||||| ||||| Sbjct 774481 TTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTG--CT-TCAACTTCAAGGGTAAT 774537 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||||||||| | |||||| Sbjct 774538 CGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774573 Score = 122 bits (134), Expect = 2e-22 Identities = 160/216 (74%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||||||||| || ||||| |||||||||||||| | | ||||| |||||| Sbjct 774590 AGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCT 774649 Query 151953 TCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || ||| ||||| || || |||| | |||||||| | | ||| |||||||| || Sbjct 774650 TCAAGTTGTTTGCCGGCAAAAATCAAGCGT-TGCTGGTCGGGTGGGATGCCTTCCTTGTC 774708 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTAAT 152068 ||| || || || ||| |||| | | || || || || |||||||| ||||| Sbjct 774709 TTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTG--CT-TCAACTTCAAGGGTAAT 774765 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||||||||| | |||||| Sbjct 774766 CGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774801 Score = 122 bits (134), Expect = 2e-22 Identities = 160/216 (74%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||||||||| || ||||| |||||||||||||| | | ||||| |||||| Sbjct 774818 AGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCT 774877 Query 151953 TCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || ||| ||||| || || |||| | |||||||| | | ||| |||||||| || Sbjct 774878 TCAAGTTGTTTGCCGGCAAAAATCAAGCGT-TGCTGGTCGGGTGGGATGCCTTCCTTGTC 774936 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTAAT 152068 ||| || || || ||| |||| | | || || || || |||||||| ||||| Sbjct 774937 TTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTG--CT-TCAACTTCAAGGGTAAT 774993 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||||||||| | |||||| Sbjct 774994 CGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 775029 Score = 107 bits (118), Expect = 4e-18 Identities = 155/212 (73%), Gaps = 9/212 (4%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || || ||||||||||| | ||| || | |||||||| | Sbjct 773911 CAAG-TGTAGAGTGGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGTCCATCTTCGA 773969 Query 151957 GGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | ||| ||||| || || |||| | |||||||| | | ||| |||||||| ||||| Sbjct 773970 GTTGTTTGCCGGCAAAAATCAAGCGT-TGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGG 774028 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||| |||| | | || || || || |||||||| || || || Sbjct 774029 ATCTTCGCCTTCACATTCTCAATAGTATCGCTTG--CT-TCAACTTCAAGGGTGATCGTC 774085 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||||||||| | |||||| Sbjct 774086 TTCCCAGTAAGAGTCTTCACGAATATCTGCAT 774117 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | |||||||||||| ||||||||||| || | || || | || || || | Sbjct 735637 CAAG-TGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCCTCCA 735695 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || |||||||| ||||| | |||||||| | | ||| |||||||| ||||||| Sbjct 735696 ATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAA 735755 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || |||| | |||| | ||| || || || || || ||||||| Sbjct 735756 TCTTCGCCTTCACGTTCTCAATTGTGTCGCTAGCCTCAACCTCGAGGGTGATCGTTTTGC 735815 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || ||||| |||| ||||| Sbjct 735816 CAGTCAGGGTTTTCACAAAGATTTGCAT 735843 >seq190 Length=1055212 Score = 120 bits (132), Expect = 7e-22 Identities = 164/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||||| ||||| ||||| || || || ||||| || ||||||||||| | | ||| Sbjct 796625 CCTGAGTCGCAGGACCAGATGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAAAGAGT 796566 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | || || || || ||||| || ||||| || | | ||| || || | | ||| Sbjct 796565 ACGGCCGTCCTCCAGCTGCTTT--CCCGCGAAAATCAATCGCTGTTGATCTGGAGGGATC 796508 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 || ||||| |||||||| || ||||||| | || | | | || || || || ||| Sbjct 796507 CCCTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGCTTCAACCTCA 796448 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || |||||||| ||||| ||||||| |||||| || Sbjct 796447 AGTGTAATGGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 796401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153196706982936