Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq168 197 3e-45 seq190 165 2e-35 >seq168 Length=1129759 Score = 197 bits (218), Expect = 3e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| ||||| |||||||| | ||| |||||| ||||||||||| |||| Sbjct 774119 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 774178 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || |||||||| |||||||| ||||| ||||| ||||| || Sbjct 774179 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774238 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| || || || | || ||||| || ||||| ||| Sbjct 774239 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 774298 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || ||||||||||| |||| ||||| |||||||||||||| Sbjct 774299 TCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774345 Score = 197 bits (218), Expect = 3e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| ||||| |||||||| | ||| |||||| ||||||||||| |||| Sbjct 774347 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 774406 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || |||||||| |||||||| ||||| ||||| ||||| || Sbjct 774407 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774466 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| || || || | || ||||| || ||||| ||| Sbjct 774467 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 774526 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || ||||||||||| |||| ||||| |||||||||||||| Sbjct 774527 TCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774573 Score = 197 bits (218), Expect = 3e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| ||||| |||||||| | ||| |||||| ||||||||||| |||| Sbjct 774575 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 774634 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || |||||||| |||||||| ||||| ||||| ||||| || Sbjct 774635 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774694 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| || || || | || ||||| || ||||| ||| Sbjct 774695 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 774754 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || ||||||||||| |||| ||||| |||||||||||||| Sbjct 774755 TCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774801 Score = 197 bits (218), Expect = 3e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| ||||| |||||||| | ||| |||||| ||||||||||| |||| Sbjct 774803 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 774862 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || |||||||| |||||||| ||||| ||||| ||||| || Sbjct 774863 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774922 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| || || || | || ||||| || ||||| ||| Sbjct 774923 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 774982 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || ||||||||||| |||| ||||| |||||||||||||| Sbjct 774983 TCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 775029 Score = 196 bits (216), Expect = 1e-44 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| ||||| |||||||| | ||| |||||| ||||||||||| |||| Sbjct 775031 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 775090 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || |||||||| |||||||| ||||| ||||| ||||| || Sbjct 775091 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 775150 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| || || || | || ||||| || ||||| ||| Sbjct 775151 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 775210 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || ||||||||||| || || | |||||| ||||| ||||||||| Sbjct 775211 TCAAGGGTGATCGTCTTCCCAGTAAGAGTCTTCACGAAGATCTGCATT 775258 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| |||||||| ||||| || | || ||||| |||||||||||||||| Sbjct 735844 ACCACCACGAAGGCGAAGCACCAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGA 735903 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| ||||| ||||| | ||||| ||||| || || | ||||| |||||| || Sbjct 735904 CAACGTACGGCCGTCCTCCAACTGTTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGG 735963 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||| ||||| ||||| || || ||| | || || ||||| || ||||| Sbjct 735964 GATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCAATTGTGTCACTGGCCTCGAC 736023 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || |||||||||||||| || |||| ||||| ||||| ||||||||| Sbjct 736024 CTCAAGAGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATT 736072 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| ||||| | |||| |||| ||| || || || |||||||| || | Sbjct 773891 CCACCACGAAGGCGCAAAACCAAGTGTAGAGTGGACTCCTTCTGAATGTTGTAATCCGAT 773950 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || ||||| || |||||||| |||||||| ||||| ||||| ||||| || Sbjct 773951 AAGGTACGTCCATCTTCGAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774010 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| || || || | || ||||| || ||||| ||| Sbjct 774011 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 774070 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || || | |||||| |||||||||||||| Sbjct 774071 TCAAGGGTGATCGTCTTCCCAGTAAGAGTCTTCACGAATATCTGCAT 774117 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| ||||| | |||| || || || ||||| |||||||||||||||| Sbjct 735617 CCACCACGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 735676 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || || ||||| | ||| || ||||| || || | ||||| |||||| || Sbjct 735677 AATGTACGACCGTCCTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGG 735736 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| ||||| ||||| || || ||| | || || ||||| ||| || || Sbjct 735737 ATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCAATTGTGTCGCTAGCCTCAACC 735796 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| |||||||| || || |||| || || || || || ||||| Sbjct 735797 TCGAGGGTGATCGTTTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 735843 >seq190 Length=1055212 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | || || || |||||||| | ||| |||||| || |||||||| |||| | Sbjct 796630 CCACCCCTGAGTCGCAGGACCAGATGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAA 796571 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || || || || || || ||||| || ||||| || || Sbjct 796570 AGAGTACGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAATCGCTGTTGATCTGGAGGG 796511 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||| ||||| ||||| || | ||||| || ||||| ||||| || Sbjct 796510 ATCCCCTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGCTTCAACC 796451 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || || || ||||| ||||| | ||||| ||||| |||||||| ||| Sbjct 796450 TCAAGTGTAATGGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATCTTC 796400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046173026617264