Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq276 113 5e-20 >seq276 Length=693516 Score = 113 bits (124), Expect = 5e-20 Identities = 120/158 (76%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 23507 AACATGCA----AAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAAT 23562 |||||||| || || || || || |||||||| ||||| |||| ||||||| || Sbjct 676615 AACATGCAGGCGAAGTCGCAGTGCAGACCTTCATCTCTACTGATCAGTTCATTACTGAAG 676674 Query 23563 GTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAA 23622 ||||| || ||||| || || |||||||| | |||||||||||| || || || || Sbjct 676675 GTTAACCCAGGCATCAAGCCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAG 676734 Query 23623 AAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACG 23660 |||||||| ||||| || || |||||||| || | ||| Sbjct 676735 AAGAAAATGCCCTCGACTGCAGCAAAGGCAACTAAACG 676772 Score = 91.5 bits (100), Expect = 2e-13 Identities = 218/328 (66%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831 |||| | ||||| || ||||| || | ||||||||| ||||| || || ||||| || Sbjct 676921 ATCTTTGATATACGTGTCAATCAGAAGTGAATACATTTCTGAATGTATGTTCTCAATCGC 676980 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTT 23891 ||||| | ||| |||||||| | | | || | | |||||| || | | || | | Sbjct 676981 GATCTGCATCCCGTAAAAACACCGAACCTCCGGAACTTGAACTTCCTGACTGAAACGCTC 677040 Query 23892 AGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTAT 23951 | | ||| || || || ||||| || ||||||||||| || | |||||| || Sbjct 677041 GACCAGATTCTCTAGCACTATTCCATCGCTTGCAGCAAAGAATGCTAACACATATGAGAT 677100 Query 23952 AAAATGTCTTTCATC--AGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCA 24009 || || | || | |||| | | | ||||| | || ||| || || | |||| Sbjct 677101 GAAGTGACGCTCGCCGACCTTGAGA--CTATCCCAATGACCAAAATCCTTGGAGAGATCA 677158 Query 24010 ACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACATTAGCCAAATATCATTA 24069 || || ||||| |||||||| ||| | || |||||| | |||||| ||| | Sbjct 677159 ACCTCTTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGCCAAACATCGTGG 677218 Query 24070 TGTTGTATTGGAAATATTACGAATCTAT 24097 | ||| || || |||| || |||| || Sbjct 677219 TATTGGATGGGGAATAGAACAAATCGAT 677246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521212810782400