Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq190 122 6e-23 seq168 111 1e-19 seq666 96.9 2e-15 >seq190 Length=1055212 Score = 122 bits (134), Expect = 6e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || || |||| || ||||| || || ||| || || || ||||||||||| Sbjct 796633 ATGCCACCCCTGAGTCGCAGGACCAGATGCAGGGTGGATTCTTTCTGAATGTTGTAATCA 796574 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | || || |||| ||||||||||| || || || ||||| ||||| ||||||| | Sbjct 796573 GAAAGAGTACGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAATCGCTGTTGATCTGGA 796514 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287 || | || ||||| || ||||| || | || | ||||| || | | ||| Sbjct 796513 GGGATCCCCTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGCTTCA 796454 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | ||||| |||||||||||||| ||||| |||||||| ||||| Sbjct 796453 ACCTCAAGTGTAATGGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 796404 >seq168 Length=1129759 Score = 111 bits (122), Expect = 1e-19 Identities = 166/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | |||||| ||||| ||| || || |||||||||||||| Sbjct 774115 CATGCCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATC 774174 Query 44167 GG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| || | || || || || || |||||||| ||||| || ||||| || Sbjct 774175 AGACAGAGTT--CGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCG 774232 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | |||||||| || |||||| ||||| | | || || ||| | | Sbjct 774233 GGTGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCT 774292 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || | ||||||||||| || || |||||||||||||| || |||||| Sbjct 774293 TCAACTTCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 774346 Score = 111 bits (122), Expect = 1e-19 Identities = 166/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | |||||| ||||| ||| || || |||||||||||||| Sbjct 774343 CATGCCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATC 774402 Query 44167 GG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| || | || || || || || |||||||| ||||| || ||||| || Sbjct 774403 AGACAGAGTT--CGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCG 774460 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | |||||||| || |||||| ||||| | | || || ||| | | Sbjct 774461 GGTGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCT 774520 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || | ||||||||||| || || |||||||||||||| || |||||| Sbjct 774521 TCAACTTCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 774574 Score = 111 bits (122), Expect = 1e-19 Identities = 166/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | |||||| ||||| ||| || || |||||||||||||| Sbjct 774571 CATGCCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATC 774630 Query 44167 GG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| || | || || || || || |||||||| ||||| || ||||| || Sbjct 774631 AGACAGAGTT--CGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCG 774688 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | |||||||| || |||||| ||||| | | || || ||| | | Sbjct 774689 GGTGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCT 774748 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || | ||||||||||| || || |||||||||||||| || |||||| Sbjct 774749 TCAACTTCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 774802 Score = 111 bits (122), Expect = 1e-19 Identities = 166/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | |||||| ||||| ||| || || |||||||||||||| Sbjct 774799 CATGCCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATC 774858 Query 44167 GG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| || | || || || || || |||||||| ||||| || ||||| || Sbjct 774859 AGACAGAGTT--CGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCG 774916 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | |||||||| || |||||| ||||| | | || || ||| | | Sbjct 774917 GGTGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCT 774976 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || | ||||||||||| || || |||||||||||||| || |||||| Sbjct 774977 TCAACTTCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 775030 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | |||||| ||||| ||| || || |||||||||||||| Sbjct 775027 CATGCCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATC 775086 Query 44167 GG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| || | || || || || || |||||||| ||||| || ||||| || Sbjct 775087 AGACAGAGTT--CGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCG 775144 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | |||||||| || |||||| ||||| | | || || ||| | | Sbjct 775145 GGTGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCT 775204 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | || |||||||| || || || |||||||||||||| ||||| Sbjct 775205 TCAACTTCAAGGGTGATCGTCTTCCCAGTAAGAGTCTTCACGAAGATCTGCAT 775257 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||||||||| || ||| || ||||||||||| || | | || |||| || Sbjct 735862 CACCAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAACGTACGGCCGTCCTC 735921 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||| || ||||| || || | || ||||| || | || | |||||||| || Sbjct 735922 CAACTGTTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTG 735981 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| |||| | |||| | || ||||| || || ||||| | || ||||||| Sbjct 735982 AATCTTCGCCTTC-ACGTTCTCAATTGTGTCACTGGCCTCGACCTCAAGAGTGATCGTCT 736040 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || |||||||||||||| ||||| Sbjct 736041 TGCCGGTCAGCGTCTTCACGAAGATCTGCAT 736071 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGG--CGCTCG 44182 ||| |||| ||| || ||| |||||| || ||||||||||| ||| || || | Sbjct 773905 CAAAACCAAGTGTAGAGTGGACTCCTTCTGAATGTTGTAATC--CGATAAGGTACGTCCA 773962 Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || || || || || |||||||| ||||| || ||||| || | || | |||||||| Sbjct 773963 TCTTCGAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTG 774022 Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 || |||||| ||||| | | || || ||| | ||| || || | || ||| Sbjct 774023 TCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTGATC 774082 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| || || || ||||||||||| || |||||| Sbjct 774083 GTCTTCCCAGTAAGAGTCTTCACGAATATCTGCATG 774118 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 ||| |||| ||| | || ||| || ||||||||||| || | | | || |||| Sbjct 735631 CAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTC 735690 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 |||| ||||| ||||| || || | || ||||| || | || | |||||||| || Sbjct 735691 CTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATC 735750 Query 44245 CGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 |||||| |||| | |||| | || |||||| | || ||||| | || |||| Sbjct 735751 TTGAATCTTCGCCTTC-ACGTTCTCAATTGTGTCGCTAGCCTCAACCTCGAGGGTGATCG 735809 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || ||||| ||||| ||||||||||| Sbjct 735810 TTTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 735843 >seq666 Length=114481 Score = 96.9 bits (106), Expect = 2e-15 Identities = 102/133 (77%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 44135 TGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGC 44194 ||||| ||| |||||||| ||||||||||| | ||| ||| |||| |||| |||| Sbjct 72266 TGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGACCGTCTTCCAACTGC 72207 Query 44195 TTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTC 44254 || || ||||| ||||||||||||||||||| ||| | || ||||| || ||||| Sbjct 72206 TTACCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTATCTTGAATCTT- 72148 Query 44255 TGCTTCAATGTTC 44267 |||| || |||| Sbjct 72147 GGCTTTAACGTTC 72135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359805182239272