Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq168 107 2e-18 seq190 98.7 9e-16 >seq168 Length=1129759 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||| || || || ||| ||||| ||||| ||||| || Sbjct 735845 CCACCACGAAGGCGAAGCACCAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 735904 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| || | ||| ||||||||||| || ||||| || ||||| | || Sbjct 735905 AACGTACGGCCGTCCTCCAACTGTTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGG 735964 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || ||||| | | ||| | || | ||||| | | ||||| || | ||| || Sbjct 735965 ATGCCTTCCTTAT-CTTGAATCTTCGCCTTCACGTTCTCAATTGTGTCACTGGCCTCGAC 736023 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || ||||| || || ||||||||||| ||||| |||||||| Sbjct 736024 CTCAAGAGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 736071 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || || |||| || || ||| ||||||||||||||| || || || Sbjct 773890 GCCACCACGAAGGCGCAAAACCAAGTGTAGAGTGGACTCCTTCTGAATGTTGTAATCCGA 773949 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||| || | || ||||| || |||||||| || |||| ||| || ||||| | || Sbjct 773950 TAAGGTACGTCCATCTTCGAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGG 774009 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| || ||||| | | ||| ||||| | || || Sbjct 774010 GATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAAC 774069 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || ||||| || || || || ||||| ||||| ||||||||| Sbjct 774070 TTCAAGGGTGATCGTCTTCCCAGTAAGAGTCTTCACGAATATCTGCATG 774118 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || || |||| |||| || ||| ||||| ||||| ||||| || Sbjct 735616 GCCACCACGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGA 735675 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | || || |||| || | |||||||||||||| || ||||| || ||||| | || Sbjct 735676 CAATGTACGACCGTCCTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGG 735735 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | || ||||| | | ||| | || | ||||| | | |||||||| | ||| | Sbjct 735736 GATGCCTTCCTTAT-CTTGAATCTTCGCCTTCACGTTCTCAATTGTGTCGCTAGCCTCAA 735794 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || |||||||| || ||||| || || || || || ||||| Sbjct 735795 CCTCGAGGGTGATCGTTTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 735843 >seq190 Length=1055212 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||||||||| ||| || ||||||||||| || || || || || || |||| || Sbjct 796612 ACCAGATGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAAAGAGTACGGCCGTCCTCC 796553 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || ||||| |||| |||||||| || | || | | |||||||| | || Sbjct 796552 AGCTGCTTTCCCGCGAAAATCAATCGCTGTTGATCTGGAGGGATCCCCTCCTTGT-CTTG 796494 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | || |||| || | | || || || || ||||| | || || || || Sbjct 796493 AATCTTGGCTTTGACATTTTCGATGGTATCCGACGCTTCAACCTCAAGTGTAATGGTCTT 796434 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || ||||| ||||| |||||||| || Sbjct 796433 TCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 796401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462060042179200