Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq126173 89.7 1e-12 seq35201 89.7 1e-12 seq110960 87.8 4e-12 seq75644 84.2 5e-11 >seq126173 Length=1598 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||| Sbjct 1527 TTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 1586 Query 165768 GCCCCACGATGG 165779 |||||||| ||| Sbjct 1587 GCCCCACGTTGG 1598 Score = 84.2 bits (92), Expect = 5e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 165713 CGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 || ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| Sbjct 1 CGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCC 60 Query 165773 ACGATGGGC 165781 ||| ||||| Sbjct 61 ACGTTGGGC 69 >seq35201 Length=4042 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 1638 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1579 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1578 CCCACGTTGGGC 1567 >seq110960 Length=1818 Score = 87.8 bits (96), Expect = 4e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || |||||||||||| ||| | ||| | | ||| ||||||| || ||||| ||| || Sbjct 1057 CTGATTGGCATGAACTGTGATATGATGTGCCGCTACCTCGAATTTGTTGCCGATCGC-TT 1115 Query 230506 TTTGT-TGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGA 230564 ||| | |||||||||||||| | | || || |||| ||||||| |||||||| Sbjct 1116 GCTGTACGAGCTTGGTTACGAGAAGATTTGGAATGCTGAGAATCCCTTTGATTTTATGGA 1175 Query 230565 GCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 | || ||| | | || || || |||||||| || |||||||| Sbjct 1176 GAATATCTCGATCGAGGGCAAAACGAACTTCTTTGAGAAGCGTGT 1220 >seq75644 Length=2520 Score = 84.2 bits (92), Expect = 5e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || |||||||||||| ||| | ||| | | ||| ||||||| || ||||| ||| | Sbjct 762 CTGATTGGCATGAACTGTGATATGATGTGCCGTTACCTCGAATTTGTTGCCGATCGCTTG 703 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | | |||||||||||||| | | || || |||| ||||||| ||||||||| Sbjct 702 CTATACGAGCTTGGTTACGAGAAGATTTGGAATGCTGAGAATCCCTTTGATTTTATGGAG 643 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 || ||| | | || || || |||||||| || |||||||| Sbjct 642 AATATCTCGATCGAGGGCAAAACAAACTTCTTTGAGAAGCGTGT 599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1053535740838740