Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq150668 172 6e-38 seq75644 159 4e-34 seq110960 149 6e-31 seq148469 98.7 1e-15 seq70016 98.7 1e-15 >seq150668 Length=1318 Score = 172 bits (190), Expect = 6e-38 Identities = 301/436 (69%), Gaps = 4/436 (1%) Strand=Plus/Minus Query 16673 CTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTC 16732 || ||||| |||| |||||| || |||||||| || ||||||||||| ||||||||||| Sbjct 1166 CTCTGGTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATTT 1107 Query 16733 TCCATGAAATCAAAAGGA--TTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGA 16790 ||||| |||||||| ||| || | || | |||| || | ||| || ||||| | | Sbjct 1106 TCCATAAAATCAAACGGATTTTCGGAGTTCCAAATCTTCT--TGTAACCAAGTTCAGACA 1049 Query 16791 TTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAA 16850 | | ||| || ||||| ||||| || | ||||| | |||| ||||| || || | Sbjct 1048 GAAGACGATCAGCCACAAACTCTATGTAGCGACACATAAGAGCGCAATTCATCCCAATGA 989 Query 16851 GACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAA 16910 ||| || || | ||| || || | |||| |||||| || || || |||| || | Sbjct 988 GACTGACGGGCAAAGCATCAGTGAGAAATTCTTGCTCAATTTTTACTGCCTCCTCCATTA 929 Query 16911 TACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGA 16970 || | | | | ||| |||| | | | ||| ||||| | || || |||| Sbjct 928 TAGAATGGATCCTCTTCTCTTCCGGTTTTGCAATGATATGCTTAAATAGGAGGCAAGCGA 869 Query 16971 AATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCA 17030 |||||||||| | |||||| |||| || ||||| || || || || | ||||||| Sbjct 868 AATCGCAATGCAGTCCCTCATCTCGACTTATAAGCTCATTGCTGAAGGTGAGGCCGGGCA 809 Query 17031 TCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCT 17090 | || || || || | ||||||||||||||| || || || ||||| | ||| | Sbjct 808 TAAGACCACGCTTTTTAAGCCAAAATATCGCGGCAAAGCTGCCTGAGAAGAAAACACCTT 749 Query 17091 CGACGGATGCAAACGC 17106 | || | |||||| || Sbjct 748 CTACAGCTGCAAAAGC 733 >seq75644 Length=2520 Score = 159 bits (176), Expect = 4e-34 Identities = 584/905 (65%), Gaps = 47/905 (5%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 ||||||| || | ||| || || || || ||||| ||||||||||| | || ||||||| Sbjct 585 TTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATTCT 644 Query 16734 CCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGAT 16791 |||| |||||||| ||||| ||| | |||| || | ||| || || ||| | Sbjct 645 CCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCT--CGTAACCAAGCTCGTATAG 702 Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851 || | ||| || |||||||| | || ||||||| | || |||||||| || || || Sbjct 703 CAAGCGATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATCAG 762 Query 16852 ACGTACCGGAAGAGCTTCCGTCAA-AAATCGTTGCTCTATAACAACCGCTTCCTTAATAA 16910 ||| || | || || | || ||| | || ||||| | | || ||||| | | Sbjct 763 TTTTACGGGTAAGGCCTCATTAAAGAAAGCCTT-TTCTATCTCCAATGCCTCCTTGAATA 821 Query 16911 TACTAGCAACTCGTTCCTCGGACGGTGTATGTTTA--AGATGTTTAAACATCAGACATGC 16968 || | ||| ||||||| | | | | || | | |||||| |||| || || || Sbjct 822 TAGCATAAACACGTTCCT--TATCGGGCTTTTTCACGATATGTTTGAACAGAAGGCAAGC 879 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 || ||| || | || ||||| | || |||||||| || || ||||| || || Sbjct 880 AAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGG 939 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 |||| || || ||||| | ||||||||| | || || || |||||||| | || Sbjct 940 CATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCC 999 Query 17089 CTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCA 17148 |||| | ||||| || | || ||||| |||| | | | | | || |||||| Sbjct 1000 TTCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCACCAATCCA 1059 Query 17149 TTTCTGCACCCACT-CGGCTTTTTGCTTTATGCAATCCATCGTTTCT-ATGGCCTTAAAT 17206 | | |||||| || ||||||| | || ||||| | |||| | ||||| ||||| Sbjct 1060 GTCAAGGGCCCACTGCGCCTTTTTG-TGTACACAATCGA-GGTTTGTGATGGCATTAAAC 1117 Query 17207 A--ATTTCTCT---------------------------TTTTCCTGTAGGTCGATTATAT 17237 | | ||||| |||||| | | || |||| Sbjct 1118 AAGAAATCTCTAAGAAACTTAGATTTAAAAATACATACTTTTCCACTGGATCTCGGATAT 1177 Query 17238 ACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATC 17297 | ||||| || || || | ||||| || ||||| || || || || || ||||| | | Sbjct 1178 ATGTATCAATCAGAAGACAATACATCTCCGAGTGAATATTTTCTATTGCCATCTGCATGC 1237 Query 17298 CGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC--CACGTAGAATCGTTCCGCTAGATT 17355 |||||||||||||| | || | || ||||||||| || || || |||||| | ||||| Sbjct 1238 CGTAAAAGCATCGGACCTCGGGTACTTGAACTTCTTGAC-TA-AACCGTTCCACCAGATT 1295 Query 17356 TTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTT 17415 ||| ||| || || || || || ||||| || || | | | | || |||| | Sbjct 1296 TTCCAGCACAATTCCATCACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAATGTCG 1355 Query 17416 TTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGG 17475 || | || |||| | ||| | | | |||||||| | ||| || ||||| Sbjct 1356 CTCTCCTGGCTTAAGTGCATCCCATTGCACAATGTCTTTGGACAAATCAACCTCTTCAAC 1415 Query 17476 GGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGG 17535 | ||| || ||| || |||||||| || | | ||| ||||| ||||| || || Sbjct 1416 TGACCAGAATGAAGCAACAGCCTTTTTGTAAAATTGCCAGATATCCGGATATTGGATTGG 1475 Query 17536 GAATA 17540 |||| Sbjct 1476 CAATA 1480 >seq110960 Length=1818 Score = 149 bits (164), Expect = 6e-31 Identities = 582/906 (64%), Gaps = 48/906 (5%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 ||||||| || | ||| || || || || ||||| ||||||||||| | || ||||||| Sbjct 1234 TTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGATATTCT 1175 Query 16734 CCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGAT 16791 |||| |||||||| ||||| ||| | |||| || | ||| || || ||| | Sbjct 1174 CCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCT--CGTAACCAAGCTCGTACAG 1117 Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851 || | ||| || |||||||| | || ||||||| | || |||||||| || || || Sbjct 1116 CAAGCGATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAATCAG 1057 Query 16852 ACGTACCGGAAGAGCTTCCGTCAA-AAATCGTTGCTCTATAACAACCGCTTCCTTAATAA 16910 || || | || || | || ||| | || ||||| | | || ||||| | | Sbjct 1056 TTTGACGGGTAAGGCCTCATTAAAGAAAGCCTT-TTCTATCTCCAATGCCTCCTTGAATA 998 Query 16911 TACTAGCAACTCGTTCCTCGGACGGTGTATGTTTA--AGATGTTTAAACATCAGACATGC 16968 || | ||| ||||||| | | | | || | | |||||| |||| || || || Sbjct 997 TAGCATAAACACGTTCCT--TATCGGGCTTTTTCACGATATGTTTGAACAGAAGGCAAGC 940 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 || ||| || | || ||||| | || |||||||| || || ||||| || || Sbjct 939 AAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGG 880 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 |||| || || ||||| | ||||||||| | || || || |||||||| | || Sbjct 879 CATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCC 820 Query 17089 CTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCA 17148 |||| | ||||| || | || ||||| |||| | | | | | || |||||| Sbjct 819 TTCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCACCAATCCA 760 Query 17149 TTTCTGCACCCACT-CGGCTTTTTGCTTTATGCAATCCATCGTTTCT-ATGGCCTTAAAT 17206 | | |||||| || ||||||| | || ||||| | ||| | ||||| ||||| Sbjct 759 GTCAAGGGCCCACTGCGCCTTTTTG-TGTACACAATCGA-GGTTCGTGATGGCATTAAAC 702 Query 17207 A--ATTTCTCT----------------------------TTTTCCTGTAGGTCGATTATA 17236 | | ||||| |||||| | | || ||| Sbjct 701 AAGAAATCTCTAAGAAAACTTAGATTTAAAAATACATACTTTTCCACTGGATCTCGGATA 642 Query 17237 TACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAAT 17296 |||||||| || || || | ||||| || || || || || || || || ||||| | Sbjct 641 TACGTATCAATCAGAAGACAATACATCTCCGAATGAATATTTTCTATTGCCATCTGCATG 582 Query 17297 CCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC--CACGTAGAATCGTTCCGCTAGAT 17354 ||||||||||||||| | || | || ||||||||| || || || |||||| | |||| Sbjct 581 CCGTAAAAGCATCGGACCTCGGGTACTTGAACTTCTTGAC-TA-AACCGTTCCACCAGAT 524 Query 17355 TTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATT 17414 |||| ||| || || || || || ||||| || || | | | | || |||| | Sbjct 523 TTTCCAGCACAATTCCATCACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAATGTC 464 Query 17415 TTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGG 17474 || | || |||| | ||| | | | |||||||| | ||| || ||||| Sbjct 463 GCTCTCCTGGCTTAAGTGCATCCCATTGCACAATGTCTTTGGACAAATCAACCTCTTCAA 404 Query 17475 GGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGG 17534 | ||| || ||| || |||||||| || | | ||| ||||| ||||| || | Sbjct 403 CTGACCAGAATGAAGCGACAGCCTTTTTGTAAAATTGCCAGATATCCGGATATTGGATTG 344 Query 17535 GGAATA 17540 | |||| Sbjct 343 GCAATA 338 >seq148469 Length=1339 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/184 (73%), Gaps = 5/184 (3%) Strand=Plus/Minus Query 119866 GTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTTATCGTTTAAGTAGATACAGACGC 119924 ||| |||||||| ||| ||||||||| ||| ||||||||||| | | ||| | | Sbjct 1200 GTAGCCGTTGGGGTCCCTTCCATCTAGACTA-TATTTATCGTTGAGGCGAATAGCTAGGG 1142 Query 119925 TTAACGCACTTTCAGGAGTCTC-GCT--CCATTCCAGTAtttttttAGCCCAGTACATAC 119981 ||| || ||| || ||| ||| ||||||||||||||| || ||||| ||||| | Sbjct 1141 CTAATGCTTCTTCTGGGCCCTCAGCTGTCCATTCCAGTATTTTCTTTGCCCAATACATTC 1082 Query 119982 GTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAAGG 120041 | | | |||||||||| || ||||| | |||||| || || || || | ||||| || Sbjct 1081 GCAGGAATCCATGCATCTTGCCTTCTCTAACCATCTGTAGCTGGGCAGAATTCCACAAAT 1022 Query 120042 GATC 120045 |||| Sbjct 1021 GATC 1018 >seq70016 Length=2671 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/184 (73%), Gaps = 5/184 (3%) Strand=Plus/Minus Query 119866 GTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTTATCGTTTAAGTAGATACAGACGC 119924 ||| |||||||| ||| ||||||||| ||| ||||||||||| | | ||| | | Sbjct 2532 GTAGCCGTTGGGGTCCCTTCCATCTAGACTA-TATTTATCGTTGAGGCGAATAGCTAGGG 2474 Query 119925 TTAACGCACTTTCAGGAGTCTC-GCT--CCATTCCAGTAtttttttAGCCCAGTACATAC 119981 ||| || ||| || ||| ||| ||||||||||||||| || ||||| ||||| | Sbjct 2473 CTAATGCTTCTTCTGGGCCCTCAGCTGTCCATTCCAGTATTTTCTTTGCCCAATACATTC 2414 Query 119982 GTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAAGG 120041 | | | |||||||||| || ||||| | |||||| || || || || | ||||| || Sbjct 2413 GCAGGAATCCATGCATCTTGCCTTCTCTAACCATCTGTAGCTGGGCAGAATTCCACAAAT 2354 Query 120042 GATC 120045 |||| Sbjct 2353 GATC 2350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515498720090640