Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq150668 159 4e-34 seq75644 152 5e-32 seq110960 141 9e-29 >seq150668 Length=1318 Score = 159 bits (176), Expect = 4e-34 Identities = 576/901 (64%), Gaps = 40/901 (4%) Strand=Plus/Minus Query 15911 CTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTT 15970 || ||||| || | |||||| || ||||| || || ||||| ||||| | |||||||||| Sbjct 1166 CTCTGGTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATTT 1107 Query 15971 TCCATAAAATCAAAGGGA--TTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAA 16028 |||||||||||||| ||| || | || | || ||||| ||| || ||||| | | Sbjct 1106 TCCATAAAATCAAACGGATTTTCGGAGTTCCAA--ATCTTCTTGTAACCAAGTTCAGACA 1049 Query 16029 CTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAA 16088 | | ||| || ||||| ||||| || ||||||| | ||||||| || || || | Sbjct 1048 GAAGACGATCAGCCACAAACTCTATGTAGCGACACATAAGAGCGCAATTCATCCCAATGA 989 Query 16089 GTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148 | | || || | ||| | || | ||||| ||| || || || || || | || | Sbjct 988 GACTGACGGGCAAAGCATCAGTGAGAAATTCTTGCTCAATTTTTACTGCCTCCTCCATTA 929 Query 16149 TATCGGTGGCTCGTGTT-TCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCG 16207 || ||| || | || || |||| | | | || ||||| | || || ||| Sbjct 928 TA-GAATGGATCCTCTTCTCTTCCGGTTTTGCAATGATATGCTTAAATAGGAGGCAAGCG 870 Query 16208 AAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGC 16267 || |||||||| ||||| || |||| || ||||| || ||| || || | || ||| Sbjct 869 AAATCGCAATGCAGTCCCTCATCTCGACTTATAAGCTCATTGCTGAAGGTGAGGCCGGGC 810 Query 16268 ATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCC 16327 || || || || || | ||| |||||||| ||||| || || ||||| | ||| Sbjct 809 ATAAGACCACGCTTTTTAAGCCAAAATATCGCGGCAAAGCTGCCTGAGAAGAAAACACCT 750 Query 16328 TCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCAT 16387 || |||| ||||||||| | ||||| | | | | || || | ||| | |||||| Sbjct 749 TCTACAGCTGCAAAAGCTGCGACACGTTCAGAGAATGGAGAATTTGTATCTCCAATCCAG 690 Query 16388 TTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAA--ACA 16445 | | |||||| || |||| | | | || |||| | | || || |||| | | Sbjct 689 TCGAGAGCCCATTGCGCCTTTTTTCTGACGCACTCCAAGTTGCCGATTGCATTAAGCAAA 630 Query 16446 ATTTCTCT----------------------------TTTTC--CTGAATATCGATTATAT 16475 | || || ||||| | |||| || | || | Sbjct 629 AAGTCCCTACACAACAAAAGATATATGCCAACTTACTTTTCAACAGAATCTC--TGATGT 572 Query 16476 ACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATC 16535 | |||||||| || | | ||||||||| || ||||| ||||| || || || || | | Sbjct 571 AAGTATCAATAAGAAGAGAGTACATTTCAGAATGTATATTCTCAATAGCGATTTGTATGC 512 Query 16536 CATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCT 16595 |||| || || ||| | || | || || ||||| | ||| || || || || | Sbjct 511 CATAAAAACAGCGAACTTCTGGGATCTGAACTTCTTGGCTAAACCGCTCGATAAGATTTT 452 Query 16596 CATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTT 16655 | || || || ||||| ||||| ||||| || | | || | || | | Sbjct 451 CCAAAACTATCCCATCACTAGCAGCGAAAAATGCAAGAACGTAAGATAGAAAGCGTCGCT 392 Query 16656 CGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCG 16715 | | | |||| || ||||| || ||||| || | ||| ||||| ||| | Sbjct 391 CTCCCGGCTTAAGTGAATTCCAATGAGGAAAGTCTTTAGACAAATCAACTTCCTCTACTG 332 Query 16716 TCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAA 16775 |||| ||| |||||| || || ||||| | ||||||||| ||| || | ||||||| Sbjct 331 TCCAGAAGGAAGCCACAGCTTTCTTATAGAATTTCCAAATGTCAGGATACTCAATGGGAA 272 Query 16776 A 16776 | Sbjct 271 A 271 >seq75644 Length=2520 Score = 152 bits (168), Expect = 5e-32 Identities = 580/904 (64%), Gaps = 45/904 (5%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 ||||||| || | ||| || || || |||||||| ||||| ||||| | || ||||| | Sbjct 585 TTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATTCT 644 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTA-ACT 16030 ||||||||||||||||||| ||| | ||||| ||| || || || ||| | Sbjct 645 CCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAACCAAGCTC-GTATAGC 703 Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGT 16090 || | ||| || |||||||| | || | ||||| | || || || || || || ||| Sbjct 704 AAGCGATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATCAGT 763 Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150 ||| || | || | | || || | ||||||| | | || || || | ||| Sbjct 764 TTTACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATATA 823 Query 16151 TCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGG---TGTTTAAACATTAGACACGCG 16207 | | ||| | | ||| | | || | | ||||| |||| || || || Sbjct 824 GCATAAACACGTTCCTTAT-CGGGCTTT--TTCACGATATGTTTGAACAGAAGGCAAGCA 880 Query 16208 AAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGC 16267 |||||| || || |||||||| | || |||||||| ||| || || || |||||| Sbjct 881 AAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGGC 940 Query 16268 ATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCC 16327 || || || ||||| | ||| ||||| | ||||| || |||||||| | || Sbjct 941 ATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCCT 1000 Query 16328 TCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCAT 16387 || | | ||||| || | || || || |||| | | | ||| || |||||| Sbjct 1001 TCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCACCAATCCAG 1060 Query 16388 TTCTGTACCCATT-CGGCTTTTTGTTTTATACAATCCATCGTTTCT-ATGGCCTTAAACA 16445 | | |||| | || |||||||| | | |||||| | |||| | ||||| ||||||| Sbjct 1061 TCAAGGGCCCACTGCGCCTTTTTGTGT-ACACAATCGAG-GTTTGTGATGGCATTAAACA 1118 Query 16446 ATT--TCTCT---------------------------TTTTCC--TGAATATCGATTATA 16474 | ||||| |||||| || || ||| |||| Sbjct 1119 AGAAATCTCTAAGAAACTTAGATTTAAAAATACATACTTTTCCACTGGATCTCGGATATA 1178 Query 16475 TACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAAT 16534 | ||||||||||| | || ||||| || ||||| || || ||||| || ||||| | Sbjct 1179 T--GTATCAATCAGAAGACAATACATCTCCGAGTGAATATTTTCTATTGCCATCTGCATG 1236 Query 16535 CCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTC 16594 || || |||||||| |||| | || ||| ||||| ||| |||||| |||| || Sbjct 1237 CCGTAAAAGCATCGGACCTCGGGTACTTGAACTTCTTGACTAAACCGTTCCACCAGATTT 1296 Query 16595 TCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTT 16654 || ||| || || ||||| ||||| || || || | | || | || |||| | Sbjct 1297 TCCAGCACAATTCCATCACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAATGTCGC 1356 Query 16655 TCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGC 16714 || | | |||| || ||| | | |||||||| | ||| || ||||| Sbjct 1357 TCTCCTGGCTTAAGTGCATCCCATTGCACAATGTCTTTGGACAAATCAACCTCTTCAACT 1416 Query 16715 GTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGA 16774 | ||| || ||| || |||||||| || | || ||| ||||| ||||| || || Sbjct 1417 GACCAGAATGAAGCAACAGCCTTTTTGTAAAATTGCCAGATATCCGGATATTGGATTGGC 1476 Query 16775 AATA 16778 |||| Sbjct 1477 AATA 1480 >seq110960 Length=1818 Score = 141 bits (156), Expect = 9e-29 Identities = 578/905 (64%), Gaps = 46/905 (5%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 ||||||| || | ||| || || || |||||||| ||||| ||||| | || ||||| | Sbjct 1234 TTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGATATTCT 1175 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTA-ACT 16030 ||||||||||||||||||| ||| | ||||| ||| || || || ||| | Sbjct 1174 CCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAACCAAGCTC-GTACAGC 1116 Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGT 16090 || | ||| || |||||||| | || | ||||| | || || || || || || ||| Sbjct 1115 AAGCGATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAATCAGT 1056 Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150 || || | || | | || || | ||||||| | | || || || | ||| Sbjct 1055 TTGACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATATA 996 Query 16151 TCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGG---TGTTTAAACATTAGACACGCG 16207 | | ||| | | ||| | | || | | ||||| |||| || || || Sbjct 995 GCATAAACACGTTCCTTAT-CGGGCTTT--TTCACGATATGTTTGAACAGAAGGCAAGCA 939 Query 16208 AAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGC 16267 |||||| || || |||||||| | || |||||||| ||| || || || |||||| Sbjct 938 AAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGGC 879 Query 16268 ATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCC 16327 || || || ||||| | ||| ||||| | ||||| || |||||||| | || Sbjct 878 ATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCCT 819 Query 16328 TCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCAT 16387 || | | ||||| || | || || || |||| | | | ||| || |||||| Sbjct 818 TCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCACCAATCCAG 759 Query 16388 TTCTGTACCCATT-CGGCTTTTTGTTTTATACAATCCATCGTTTCT-ATGGCCTTAAACA 16445 | | |||| | || |||||||| | | |||||| | ||| | ||||| ||||||| Sbjct 758 TCAAGGGCCCACTGCGCCTTTTTGTGT-ACACAATCGAG-GTTCGTGATGGCATTAAACA 701 Query 16446 ATT--TCTCT----------------------------TTTTCC--TGAATATCGATTAT 16473 | ||||| |||||| || || ||| || Sbjct 700 AGAAATCTCTAAGAAAACTTAGATTTAAAAATACATACTTTTCCACTGGATCTCGG--AT 643 Query 16474 ATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAA 16533 ||||||||||||||| | || ||||| || || || || || ||||| || ||||| | Sbjct 642 ATACGTATCAATCAGAAGACAATACATCTCCGAATGAATATTTTCTATTGCCATCTGCAT 583 Query 16534 TCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTT 16593 || || |||||||| |||| | || ||| ||||| ||| |||||| |||| || Sbjct 582 GCCGTAAAAGCATCGGACCTCGGGTACTTGAACTTCTTGACTAAACCGTTCCACCAGATT 523 Query 16594 CTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTT 16653 || ||| || || ||||| ||||| || || || | | || | || |||| | Sbjct 522 TTCCAGCACAATTCCATCACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAATGTCG 463 Query 16654 TTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGG 16713 || | | |||| || ||| | | |||||||| | ||| || ||||| Sbjct 462 CTCTCCTGGCTTAAGTGCATCCCATTGCACAATGTCTTTGGACAAATCAACCTCTTCAAC 403 Query 16714 CGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGG 16773 | ||| || ||| || |||||||| || | || ||| ||||| ||||| || || Sbjct 402 TGACCAGAATGAAGCGACAGCCTTTTTGTAAAATTGCCAGATATCCGGATATTGGATTGG 343 Query 16774 AAATA 16778 |||| Sbjct 342 CAATA 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509391768833360