Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq110960 201 1e-46
seq75644 194 2e-44
seq150668 111 2e-19
seq157544 102 8e-17
seq171037 82.4 8e-11
seq32333 82.4 8e-11
>seq110960
Length=1818
Score = 201 bits (222), Expect = 1e-46
Identities = 448/671 (67%), Gaps = 40/671 (6%)
Strand=Plus/Plus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
|| || || || ||| ||||| || ||||||||||| || || || ||||| |||||
Sbjct 301 GAACCACTACTTCGCCCAAACCCTCGTCGGTTCGTGATATTGCCAATCCAATATCCGGAT 360
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| | ||||||||||| | || || |||||| | || || ||||| || ||
Sbjct 361 ATCTGGCAATTTTACAAAAAGGCTGTCGCTTCATTCTGGTCAGTTGAAGAGGTTGATTTG 420
Query 116696 TCCAAGGACA-CGAGCGACTGGGA-GCGCTTGAACGACAACGAGCGCCATTTCATCAAGC 116753
||||| |||| | || | ||||| || ||| | | | | ||||| ||||| || |
Sbjct 421 TCCAAAGACATTGTGC-AATGGGATGCACTTAAGCCAGGA-GAGCGACATTTTATATCGT 478
Query 116754 ACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTT 116813
|||| || || || ||||| ||||| || || || || || |||||||| || || |
Sbjct 479 ACGTTCTCGCTTTCTTCGCTGCCAGTGATGGAATTGTGCTGGAAAATCTGGTGGAACGGT 538
Query 116814 TCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873
| ||| || || || || |||||| || ||||| |||||| | ||||| || || |
Sbjct 539 TTAGTCAAGAAGTTCAAGTACCCGAGGTCCGATGCTTTTACGGCATGCAGATGGCAATAG 598
Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGG 116933
| || | || ||||| ||||||| || || || ||||| | || | | | ||
Sbjct 599 AAAATATTCATTCGGAGATGTATTGTCTTCTGATTGATACGTATATCCGAGATCCAGTGG 658
Query 116934 AGAAG---------------CTCCGT---------------TTGTTGAACGCCATCGAGA 116963
| ||| || || ||||| || |||||| |
Sbjct 659 AAAAGTATGTATTTTTAAATCTAAGTTTTCTTAGAGATTTCTTGTTTAATGCCATC---A 715
Query 116964 CGATGC-CG--TGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAG 117020
||| | || || || | | ||||| ||||||| || |||||| | | | |
Sbjct 716 CGAACCTCGATTGTGTACACAAAAAGGCGCAGTGGGCCCTTGACTGGATTGGTGATACAA 775
Query 117021 AGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGG 117080
|| | | || | |||||| | | ||||| || || |||| || ||||||||||| |
Sbjct 776 AGTCAACGTTTGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCG 835
Query 117081 GCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCA 117140
||||||| || | ||||||||||| ||||| || ||||| ||||| ||| |||| ||||
Sbjct 836 GCAGTTTTGCGTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCA 895
Query 117141 GCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200
|||| || || || | ||||| || || || ||||||||| || | |||||||
Sbjct 896 GCAATGAACTTATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCA 955
Query 117201 AGCATTTGGTG 117211
| ||| | |||
Sbjct 956 AACATATCGTG 966
>seq75644
Length=2520
Score = 194 bits (214), Expect = 2e-44
Identities = 446/670 (67%), Gaps = 39/670 (6%)
Strand=Plus/Minus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
|| || || || ||| ||||| || ||||| ||||| || || || ||||| |||||
Sbjct 1517 GAACCACTACTTCGCCCAAACCCTCGTCGGTTTGTGATATTGCCAATCCAATATCCGGAT 1458
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| | ||||||||||| | || || |||||| | || || ||||| || ||
Sbjct 1457 ATCTGGCAATTTTACAAAAAGGCTGTTGCTTCATTCTGGTCAGTTGAAGAGGTTGATTTG 1398
Query 116696 TCCAAGGACA-CGAGCGACTGGGA-GCGCTTGAACGACAACGAGCGCCATTTCATCAAGC 116753
||||| |||| | || | ||||| || ||| | | | | ||||| ||||| || |
Sbjct 1397 TCCAAAGACATTGTGC-AATGGGATGCACTTAAGCCAGGA-GAGCGACATTTTATATCGT 1340
Query 116754 ACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTT 116813
|||| || || || ||||| ||||| || || || || || |||||||| || || |
Sbjct 1339 ACGTTCTCGCTTTCTTCGCTGCCAGTGATGGAATTGTGCTGGAAAATCTGGTGGAACGGT 1280
Query 116814 TCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873
| ||| || || || || |||||| || ||||| |||||| | ||||| || || |
Sbjct 1279 TTAGTCAAGAAGTTCAAGTACCCGAGGTCCGATGCTTTTACGGCATGCAGATGGCAATAG 1220
Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGG 116933
| || | |||||||| ||||||| || || || || || | || | | | ||
Sbjct 1219 AAAATATTCACTCGGAGATGTATTGTCTTCTGATTGATACATATATCCGAGATCCAGTGG 1160
Query 116934 AGAAG---------------CTCCGT--------------TTGTTGAACGCCATCGAGAC 116964
| ||| || || ||||| || |||||| ||
Sbjct 1159 AAAAGTATGTATTTTTAAATCTAAGTTTCTTAGAGATTTCTTGTTTAATGCCATC---AC 1103
Query 116965 GATGC-CG--TGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGA 117021
| | || || || | | ||||| ||||||| || |||||| | | | | |
Sbjct 1102 AAACCTCGATTGTGTACACAAAAAGGCGCAGTGGGCCCTTGACTGGATTGGTGATACAAA 1043
Query 117022 GGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGG 117081
| | | || | |||||| | | ||||| || || |||| || ||||||||||| ||
Sbjct 1042 GTCAACGTTTGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGG 983
Query 117082 CAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAG 117141
|||||| || | ||||||||||| ||||| || ||||| ||||| ||| |||| |||||
Sbjct 982 CAGTTTTGCGTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAG 923
Query 117142 CAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAA 117201
||| || || || | ||||| || || || ||||||||| || | ||||||||
Sbjct 922 CAATGAACTTATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAA 863
Query 117202 GCATTTGGTG 117211
||| | |||
Sbjct 862 ACATATCGTG 853
>seq150668
Length=1318
Score = 111 bits (122), Expect = 2e-19
Identities = 120/159 (75%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106
|| || || || || || || || ||||| || ||||| || ||||| |||||||||||
Sbjct 733 GCTTTTGCAGCTGTAGAAGGTGTTTTCTTCTCAGGCAGCTTTGCCGCGATATTTTGGCTT 792
Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166
|| || || || || ||||||||||| || |||||||| ||||| || | || |||
Sbjct 793 AAAAAGCGTGGTCTTATGCCCGGCCTCACCTTCAGCAATGAGCTTATAAGTCGAGATGAG 852
Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCAT 117205
|| ||||||||||| || || || | || || ||||||
Sbjct 853 GGACTGCATTGCGATTTCGCTTGCCTCCTATTTAAGCAT 891
>seq157544
Length=1252
Score = 102 bits (112), Expect = 8e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||||||||||||||| || || || || || || ||||| |||| || || | | |
Sbjct 1033 ATGCAAATATTCGTAAAGACCCTTACTGGAAAGACTATCACACTCGAGGTTGAGTCGAGC 1092
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | || | ||||||| || || ||||||||||| |||| |||
Sbjct 1093 GATACGATAGAGAATGTGAAAGCTAAAATTCAGGATAAGGAGGGCATCCCACCGGATCAG 1152
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || || | || ||||||||||| || || | ||||| || |||||||||
Sbjct 1153 CAGCGTCTAATTTTTGCAGGCAAACAGCTAGAGGATGGTCGCACTCTGTCAGACTACAAC 1212
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| || ||||| | || || ||||| ||
Sbjct 1213 ATTCAAAAGGAATCAACTCTACATCTTGT 1241
>seq171037
Length=1136
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || ||||| || |||||||| || || || | || |||||| | |
Sbjct 789 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 848
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| ||| ||| |||| | ||||| | || ||||| || || ||| | ||||||
Sbjct 849 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 908
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|||||| | || | || || ||||| || || ||| || || | ||| || ||
Sbjct 909 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAAT 968
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|| ||||| || | || |||| || ||| | | | ||||| |||
Sbjct 969 ATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAGGGGAGGC 1016
>seq32333
Length=4216
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || ||||| || |||||||| || || || | || |||||| | |
Sbjct 3987 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 3928
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| ||| ||| |||| | ||||| | || ||||| || || ||| | ||||||
Sbjct 3927 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 3868
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|||||| | || | || || ||||| || || ||| || || | ||| || ||
Sbjct 3867 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAAT 3808
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|| ||||| || | || |||| || ||| | | | ||||| |||
Sbjct 3807 ATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAGGGGAGGC 3760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 513181520944480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |