Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq110960 201 1e-46 seq75644 194 2e-44 seq150668 111 2e-19 seq157544 102 8e-17 seq171037 82.4 8e-11 seq32333 82.4 8e-11 >seq110960 Length=1818 Score = 201 bits (222), Expect = 1e-46 Identities = 448/671 (67%), Gaps = 40/671 (6%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || || || ||| ||||| || ||||||||||| || || || ||||| ||||| Sbjct 301 GAACCACTACTTCGCCCAAACCCTCGTCGGTTCGTGATATTGCCAATCCAATATCCGGAT 360 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| | ||||||||||| | || || |||||| | || || ||||| || || Sbjct 361 ATCTGGCAATTTTACAAAAAGGCTGTCGCTTCATTCTGGTCAGTTGAAGAGGTTGATTTG 420 Query 116696 TCCAAGGACA-CGAGCGACTGGGA-GCGCTTGAACGACAACGAGCGCCATTTCATCAAGC 116753 ||||| |||| | || | ||||| || ||| | | | | ||||| ||||| || | Sbjct 421 TCCAAAGACATTGTGC-AATGGGATGCACTTAAGCCAGGA-GAGCGACATTTTATATCGT 478 Query 116754 ACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTT 116813 |||| || || || ||||| ||||| || || || || || |||||||| || || | Sbjct 479 ACGTTCTCGCTTTCTTCGCTGCCAGTGATGGAATTGTGCTGGAAAATCTGGTGGAACGGT 538 Query 116814 TCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | ||| || || || || |||||| || ||||| |||||| | ||||| || || | Sbjct 539 TTAGTCAAGAAGTTCAAGTACCCGAGGTCCGATGCTTTTACGGCATGCAGATGGCAATAG 598 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGG 116933 | || | || ||||| ||||||| || || || ||||| | || | | | || Sbjct 599 AAAATATTCATTCGGAGATGTATTGTCTTCTGATTGATACGTATATCCGAGATCCAGTGG 658 Query 116934 AGAAG---------------CTCCGT---------------TTGTTGAACGCCATCGAGA 116963 | ||| || || ||||| || |||||| | Sbjct 659 AAAAGTATGTATTTTTAAATCTAAGTTTTCTTAGAGATTTCTTGTTTAATGCCATC---A 715 Query 116964 CGATGC-CG--TGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAG 117020 ||| | || || || | | ||||| ||||||| || |||||| | | | | Sbjct 716 CGAACCTCGATTGTGTACACAAAAAGGCGCAGTGGGCCCTTGACTGGATTGGTGATACAA 775 Query 117021 AGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGG 117080 || | | || | |||||| | | ||||| || || |||| || ||||||||||| | Sbjct 776 AGTCAACGTTTGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCG 835 Query 117081 GCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCA 117140 ||||||| || | ||||||||||| ||||| || ||||| ||||| ||| |||| |||| Sbjct 836 GCAGTTTTGCGTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCA 895 Query 117141 GCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 |||| || || || | ||||| || || || ||||||||| || | ||||||| Sbjct 896 GCAATGAACTTATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCA 955 Query 117201 AGCATTTGGTG 117211 | ||| | ||| Sbjct 956 AACATATCGTG 966 >seq75644 Length=2520 Score = 194 bits (214), Expect = 2e-44 Identities = 446/670 (67%), Gaps = 39/670 (6%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || || || ||| ||||| || ||||| ||||| || || || ||||| ||||| Sbjct 1517 GAACCACTACTTCGCCCAAACCCTCGTCGGTTTGTGATATTGCCAATCCAATATCCGGAT 1458 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| | ||||||||||| | || || |||||| | || || ||||| || || Sbjct 1457 ATCTGGCAATTTTACAAAAAGGCTGTTGCTTCATTCTGGTCAGTTGAAGAGGTTGATTTG 1398 Query 116696 TCCAAGGACA-CGAGCGACTGGGA-GCGCTTGAACGACAACGAGCGCCATTTCATCAAGC 116753 ||||| |||| | || | ||||| || ||| | | | | ||||| ||||| || | Sbjct 1397 TCCAAAGACATTGTGC-AATGGGATGCACTTAAGCCAGGA-GAGCGACATTTTATATCGT 1340 Query 116754 ACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTT 116813 |||| || || || ||||| ||||| || || || || || |||||||| || || | Sbjct 1339 ACGTTCTCGCTTTCTTCGCTGCCAGTGATGGAATTGTGCTGGAAAATCTGGTGGAACGGT 1280 Query 116814 TCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | ||| || || || || |||||| || ||||| |||||| | ||||| || || | Sbjct 1279 TTAGTCAAGAAGTTCAAGTACCCGAGGTCCGATGCTTTTACGGCATGCAGATGGCAATAG 1220 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGG 116933 | || | |||||||| ||||||| || || || || || | || | | | || Sbjct 1219 AAAATATTCACTCGGAGATGTATTGTCTTCTGATTGATACATATATCCGAGATCCAGTGG 1160 Query 116934 AGAAG---------------CTCCGT--------------TTGTTGAACGCCATCGAGAC 116964 | ||| || || ||||| || |||||| || Sbjct 1159 AAAAGTATGTATTTTTAAATCTAAGTTTCTTAGAGATTTCTTGTTTAATGCCATC---AC 1103 Query 116965 GATGC-CG--TGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGA 117021 | | || || || | | ||||| ||||||| || |||||| | | | | | Sbjct 1102 AAACCTCGATTGTGTACACAAAAAGGCGCAGTGGGCCCTTGACTGGATTGGTGATACAAA 1043 Query 117022 GGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGG 117081 | | | || | |||||| | | ||||| || || |||| || ||||||||||| || Sbjct 1042 GTCAACGTTTGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGG 983 Query 117082 CAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAG 117141 |||||| || | ||||||||||| ||||| || ||||| ||||| ||| |||| ||||| Sbjct 982 CAGTTTTGCGTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAG 923 Query 117142 CAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAA 117201 ||| || || || | ||||| || || || ||||||||| || | |||||||| Sbjct 922 CAATGAACTTATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAA 863 Query 117202 GCATTTGGTG 117211 ||| | ||| Sbjct 862 ACATATCGTG 853 >seq150668 Length=1318 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 || || || || || || || || ||||| || ||||| || ||||| ||||||||||| Sbjct 733 GCTTTTGCAGCTGTAGAAGGTGTTTTCTTCTCAGGCAGCTTTGCCGCGATATTTTGGCTT 792 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 || || || || || ||||||||||| || |||||||| ||||| || | || ||| Sbjct 793 AAAAAGCGTGGTCTTATGCCCGGCCTCACCTTCAGCAATGAGCTTATAAGTCGAGATGAG 852 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCAT 117205 || ||||||||||| || || || | || || |||||| Sbjct 853 GGACTGCATTGCGATTTCGCTTGCCTCCTATTTAAGCAT 891 >seq157544 Length=1252 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||||||||| || || || || || || ||||| |||| || || | | | Sbjct 1033 ATGCAAATATTCGTAAAGACCCTTACTGGAAAGACTATCACACTCGAGGTTGAGTCGAGC 1092 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | || | ||||||| || || ||||||||||| |||| ||| Sbjct 1093 GATACGATAGAGAATGTGAAAGCTAAAATTCAGGATAAGGAGGGCATCCCACCGGATCAG 1152 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | || ||||||||||| || || | ||||| || ||||||||| Sbjct 1153 CAGCGTCTAATTTTTGCAGGCAAACAGCTAGAGGATGGTCGCACTCTGTCAGACTACAAC 1212 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || ||||| | || || ||||| || Sbjct 1213 ATTCAAAAGGAATCAACTCTACATCTTGT 1241 >seq171037 Length=1136 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || |||||||| || || || | || |||||| | | Sbjct 789 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 848 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| ||| ||| |||| | ||||| | || ||||| || || ||| | |||||| Sbjct 849 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 908 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||| | || | || || ||||| || || ||| || || | ||| || || Sbjct 909 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAAT 968 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||| || | || |||| || ||| | | | ||||| ||| Sbjct 969 ATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAGGGGAGGC 1016 >seq32333 Length=4216 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || |||||||| || || || | || |||||| | | Sbjct 3987 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 3928 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| ||| ||| |||| | ||||| | || ||||| || || ||| | |||||| Sbjct 3927 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 3868 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||| | || | || || ||||| || || ||| || || | ||| || || Sbjct 3867 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAAT 3808 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||| || | || |||| || ||| | | | ||||| ||| Sbjct 3807 ATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAGGGGAGGC 3760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513181520944480