Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq171037 165 1e-35 seq32333 165 1e-35 seq157544 127 3e-24 seq270304 122 1e-22 seq256849 93.3 6e-14 >seq171037 Length=1136 Score = 165 bits (182), Expect = 1e-35 Identities = 177/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594 || ||||||||||||| | || ||||| || || || || || ||| | || | ||| | Sbjct 557 TAAAATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATC 616 Query 124595 AAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGA 124654 || ||| ||||| || |||| ||| |||||||| || |||||||| |||||||| Sbjct 617 AAGTGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGA 676 Query 124655 TCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTA 124714 ||||||||||||||||||||| ||||||||| | || ||| | | || || |||||| Sbjct 677 TCAACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTA 736 Query 124715 TAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| |||||| | ||| | || | ||| | || ||||| || Sbjct 737 CAATATTCAGAAAGAGTCAACTCTTCATCTTGTGCTTCGTCTTCGTGGTGGCAT 790 Score = 143 bits (158), Expect = 4e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || ||||| || || ||| | || | ||| ||| | Sbjct 789 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 848 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||| | || | ||| ||||| |||||||||||||| || || ||||| || Sbjct 849 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 908 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| ||||||||| |||| || ||||| |||||| ||||||||| Sbjct 909 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAAT 968 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||||| |||||||| |||||||| |||| Sbjct 969 ATTCAGAAAGAATCTACTTTGCACCTGGT 997 >seq32333 Length=4216 Score = 165 bits (182), Expect = 1e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| | || ||||| || || || || || ||| | || | ||| ||| Sbjct 4216 AATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCAAG 4157 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| ||||| || |||| ||| |||||||| || |||||||| ||||||||||| Sbjct 4156 TGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGATCA 4097 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||||||||||||||| ||||||||| | || ||| | | || || |||||| || Sbjct 4096 ACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTACAA 4037 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| ||||| |||||| | ||| | || | ||| | || ||||| || Sbjct 4036 TATTCAGAAAGAGTCAACTCTTCATCTTGTGCTTCGTCTTCGTGGTGGCAT 3986 Score = 143 bits (158), Expect = 4e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || ||||| || || ||| | || | ||| ||| | Sbjct 3987 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 3928 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||| | || | ||| ||||| |||||||||||||| || || ||||| || Sbjct 3927 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 3868 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| ||||||||| |||| || ||||| |||||| ||||||||| Sbjct 3867 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAAT 3808 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||||| |||||||| |||||||| |||| Sbjct 3807 ATTCAGAAAGAATCTACTTTGCACCTGGT 3779 >seq157544 Length=1252 Score = 127 bits (140), Expect = 3e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 124533 AATACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA 124592 || || ||||||||||| ||||||| || || || || ||||| || | ||| |||| Sbjct 1027 AAAACGATGCAAATATTCGTAAAGACCCTTACTGGAAAGACTATCACACTCGAGGTTGAG 1086 Query 124593 GCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT 124652 | | ||||| || ||| | ||| |||||||| ||||| || || || ||||| Sbjct 1087 TCGAGCGATACGATAGAGAATGTGAAAGCTAAAATTCAGGATAAGGAGGGCATCCCACCG 1146 Query 124653 GATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGAT 124712 ||||| || | || ||||||||||| ||||| |||||||| |||| || | ||| Sbjct 1147 GATCAGCAGCGTCTAATTTTTGCAGGCAAACAGCTAGAGGATGGTCGCACTCTGTCAGAC 1206 Query 124713 TATAATATTCAAAAAGAATCAACTTTGCAT 124742 || || |||||||| ||||||||| | ||| Sbjct 1207 TACAACATTCAAAAGGAATCAACTCTACAT 1236 >seq270304 Length=645 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || ||| |||| || ||||||||||| |||| ||||| | | Sbjct 304 ATGCAAATTTTTGTTAAAACATTAACCGGAAAAACTATAACCCTAGAAGTTGAACCGACA 245 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||| | ||| | || || || |||||||| |||||||| || | ||||| Sbjct 244 AATACTGTCGAAAATGTGAAGGCAAAGATACAAGATAAGGAAGGTATTCCCTCAGATCAG 185 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||||||||| || ||||| || | || ||| |||| ||| | || |||||| Sbjct 184 CAAAGGCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTTCTGACTATAAT 125 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| ||| | ||| | ||| | ||| | || || || || Sbjct 124 ATACAAAAGGAATCTACTCTTCATCTAGTTCTTCGTCTTCGTGGGGGCAT 75 >seq256849 Length=689 Score = 93.3 bits (102), Expect = 6e-14 Identities = 116/158 (73%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 124626 ATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAA 124685 ||||| ||||| || || || ||||| || || || | || ||||||||||| || || Sbjct 503 ATTCAGGATAAGGAGGGCATCCCACCAGACCAGCAGCGTCTAATTTTTGCAGGCAAGCAG 562 Query 124686 TTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTG 124745 |||||||| |||| || || ||| || || |||||||| ||||||||| | || | Sbjct 563 CTAGAGGATGGTCGCACTTTGTCAGACTACAACATTCAAAAGGAATCAACTCTACACCTT 622 Query 124746 GTTTTACGTTTACGAGGTGGTAT-TAAAAATTCATAAA 124782 || | ||| | |||||||| || ||| ||| |||| Sbjct 623 GTCCTCCGTCTCCGAGGTGGGATGCAAATCTTCGTAAA 660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752468190406400