Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 165 1e-35
seq32333 165 1e-35
seq157544 127 3e-24
seq270304 122 1e-22
seq256849 93.3 6e-14
>seq171037
Length=1136
Score = 165 bits (182), Expect = 1e-35
Identities = 177/234 (76%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594
|| ||||||||||||| | || ||||| || || || || || ||| | || | ||| |
Sbjct 557 TAAAATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATC 616
Query 124595 AAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGA 124654
|| ||| ||||| || |||| ||| |||||||| || |||||||| ||||||||
Sbjct 617 AAGTGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGA 676
Query 124655 TCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTA 124714
||||||||||||||||||||| ||||||||| | || ||| | | || || ||||||
Sbjct 677 TCAACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTA 736
Query 124715 TAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|||||||| ||||| |||||| | ||| | || | ||| | || ||||| ||
Sbjct 737 CAATATTCAGAAAGAGTCAACTCTTCATCTTGTGCTTCGTCTTCGTGGTGGCAT 790
Score = 143 bits (158), Expect = 4e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | || || || || ||||| || || ||| | || | ||| ||| |
Sbjct 789 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 848
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| ||| | || | ||| ||||| |||||||||||||| || || ||||| ||
Sbjct 849 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 908
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | | |||||||| ||||||||| |||| || ||||| |||||| |||||||||
Sbjct 909 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAAT 968
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747
||||| |||||||| |||||||| ||||
Sbjct 969 ATTCAGAAAGAATCTACTTTGCACCTGGT 997
>seq32333
Length=4216
Score = 165 bits (182), Expect = 1e-35
Identities = 175/231 (76%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||||||| | || ||||| || || || || || ||| | || | ||| |||
Sbjct 4216 AATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCAAG 4157
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||| ||||| || |||| ||| |||||||| || |||||||| |||||||||||
Sbjct 4156 TGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGATCA 4097
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|||||||||||||||||| ||||||||| | || ||| | | || || |||||| ||
Sbjct 4096 ACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTACAA 4037
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|||||| ||||| |||||| | ||| | || | ||| | || ||||| ||
Sbjct 4036 TATTCAGAAAGAGTCAACTCTTCATCTTGTGCTTCGTCTTCGTGGTGGCAT 3986
Score = 143 bits (158), Expect = 4e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | || || || || ||||| || || ||| | || | ||| ||| |
Sbjct 3987 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 3928
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| ||| | || | ||| ||||| |||||||||||||| || || ||||| ||
Sbjct 3927 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 3868
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | | |||||||| ||||||||| |||| || ||||| |||||| |||||||||
Sbjct 3867 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAAT 3808
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747
||||| |||||||| |||||||| ||||
Sbjct 3807 ATTCAGAAAGAATCTACTTTGCACCTGGT 3779
>seq157544
Length=1252
Score = 127 bits (140), Expect = 3e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 124533 AATACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA 124592
|| || ||||||||||| ||||||| || || || || ||||| || | ||| ||||
Sbjct 1027 AAAACGATGCAAATATTCGTAAAGACCCTTACTGGAAAGACTATCACACTCGAGGTTGAG 1086
Query 124593 GCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT 124652
| | ||||| || ||| | ||| |||||||| ||||| || || || |||||
Sbjct 1087 TCGAGCGATACGATAGAGAATGTGAAAGCTAAAATTCAGGATAAGGAGGGCATCCCACCG 1146
Query 124653 GATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGAT 124712
||||| || | || ||||||||||| ||||| |||||||| |||| || | |||
Sbjct 1147 GATCAGCAGCGTCTAATTTTTGCAGGCAAACAGCTAGAGGATGGTCGCACTCTGTCAGAC 1206
Query 124713 TATAATATTCAAAAAGAATCAACTTTGCAT 124742
|| || |||||||| ||||||||| | |||
Sbjct 1207 TACAACATTCAAAAGGAATCAACTCTACAT 1236
>seq270304
Length=645
Score = 122 bits (134), Expect = 1e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| | || ||| |||| || ||||||||||| |||| ||||| | |
Sbjct 304 ATGCAAATTTTTGTTAAAACATTAACCGGAAAAACTATAACCCTAGAAGTTGAACCGACA 245
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|||| | ||| | || || || |||||||| |||||||| || | |||||
Sbjct 244 AATACTGTCGAAAATGTGAAGGCAAAGATACAAGATAAGGAAGGTATTCCCTCAGATCAG 185
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|||||||||||||| || ||||| || | || ||| |||| ||| | || ||||||
Sbjct 184 CAAAGGCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTTCTGACTATAAT 125
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||| ||||| ||| | ||| | ||| | ||| | || || || ||
Sbjct 124 ATACAAAAGGAATCTACTCTTCATCTAGTTCTTCGTCTTCGTGGGGGCAT 75
>seq256849
Length=689
Score = 93.3 bits (102), Expect = 6e-14
Identities = 116/158 (73%), Gaps = 1/158 (1%)
Strand=Plus/Plus
Query 124626 ATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAA 124685
||||| ||||| || || || ||||| || || || | || ||||||||||| || ||
Sbjct 503 ATTCAGGATAAGGAGGGCATCCCACCAGACCAGCAGCGTCTAATTTTTGCAGGCAAGCAG 562
Query 124686 TTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTG 124745
|||||||| |||| || || ||| || || |||||||| ||||||||| | || |
Sbjct 563 CTAGAGGATGGTCGCACTTTGTCAGACTACAACATTCAAAAGGAATCAACTCTACACCTT 622
Query 124746 GTTTTACGTTTACGAGGTGGTAT-TAAAAATTCATAAA 124782
|| | ||| | |||||||| || ||| ||| ||||
Sbjct 623 GTCCTCCGTCTCCGAGGTGGGATGCAAATCTTCGTAAA 660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 752468190406400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |