Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq157544 116 3e-21
seq171037 100 2e-16
seq32333 100 2e-16
>seq157544
Length=1252
Score = 116 bits (128), Expect = 3e-21
Identities = 158/219 (72%), Gaps = 1/219 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| || || |||||||||||||| || || |||||| |||||| |||||||| ||
Sbjct 1229 GTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCCTCTAGCTGTTTGCCT 1170
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| | || |||||||||||||| || || ||||||||||| || |||||| |||
Sbjct 1169 GCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCCTGAATTTTAGCTTTC 1110
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | || || | ||| ||||||| || | || || || || || ||
Sbjct 1109 ACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGATAGTCTTTCCAGTAAGGGTC 1050
Query 118722 TTTACAAAAATCTGCAT-GGCTTATTCTATTACTCGTTT 118759
||||| || || ||||| | |||||||||| || ||||
Sbjct 1049 TTTACGAATATTTGCATCGTTTTATTCTATTTCTAGTTT 1011
>seq171037
Length=1136
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
||||| | | ||| | ||||| ||| | ||||| ||||| ||||| || ||||||
Sbjct 1015 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 956
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| || || | || || || |||||||| || | || | || ||||| || || ||
Sbjct 955 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 896
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGAC 118690
|| || || || ||| ||||| ||| | | ||| || ||||| | || | |||||
Sbjct 895 ATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGAT-TCGAC 837
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| | || | || ||||| ||||||||||| |||||||||||||||
Sbjct 836 TTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCATG 788
>seq32333
Length=4216
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
||||| | | ||| | ||||| ||| | ||||| ||||| ||||| || ||||||
Sbjct 3761 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 3820
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| || || | || || || |||||||| || | || | || ||||| || || ||
Sbjct 3821 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 3880
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGAC 118690
|| || || || ||| ||||| ||| | | ||| || ||||| | || | |||||
Sbjct 3881 ATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGAT-TCGAC 3939
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| | || | || ||||| ||||||||||| |||||||||||||||
Sbjct 3940 TTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCATG 3988
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 432157506323416
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |