Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 122 1e-22
seq32333 122 1e-22
seq270304 96.9 5e-15
>seq171037
Length=1136
Score = 122 bits (134), Expect = 1e-22
Identities = 109/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| || || ||||||| |||| || |||||||||||||| ||||||||||| ||
Sbjct 1015 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 956
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| || | || || |||| ||||||||| |||||||| |||| |||||| || || |||
Sbjct 955 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 896
Query 146171 ATTCCTTCTTTATCTTG 146187
|||||||||||||||||
Sbjct 895 ATTCCTTCTTTATCTTG 879
Score = 95.1 bits (104), Expect = 2e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||| | | || | ||| | ||| || ||||| ||||| ||||||||
Sbjct 787 CCACCACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGAT 728
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| || |||| ||| || | |||||||||||||||||| | ||||| ||||| || |||
Sbjct 727 AGGGTCCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGA 668
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| || |||||
Sbjct 667 ATACCTTCCTTGTCTTG 651
>seq32333
Length=4216
Score = 122 bits (134), Expect = 1e-22
Identities = 109/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| || || ||||||| |||| || |||||||||||||| ||||||||||| ||
Sbjct 3761 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 3820
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| || | || || |||| ||||||||| |||||||| |||| |||||| || || |||
Sbjct 3821 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 3880
Query 146171 ATTCCTTCTTTATCTTG 146187
|||||||||||||||||
Sbjct 3881 ATTCCTTCTTTATCTTG 3897
Score = 95.1 bits (104), Expect = 2e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||| | | || | ||| | ||| || ||||| ||||| ||||||||
Sbjct 3989 CCACCACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGAT 4048
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| || |||| ||| || | |||||||||||||||||| | ||||| ||||| || |||
Sbjct 4049 AGGGTCCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGA 4108
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| || |||||
Sbjct 4109 ATACCTTCCTTGTCTTG 4125
>seq270304
Length=645
Score = 96.9 bits (106), Expect = 5e-15
Identities = 139/204 (68%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 146074 ATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTG 146133
||| | ||||||||| || ||||||||| || ||||| || | | ||| || | ||
Sbjct 101 ATGAAGAGTAGATTCCTTTTGTATATTATAGTCAGAAAGTGTACGACCATCTTCAAGCTG 160
Query 146134 TTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNN 146193
|||||||| ||||| | ||||||||||| | ||||| ||||| ||||||||
Sbjct 161 CTTTCCAGCGAAAATAAGCCTTTGCTGATCTGAGGGAATACCTTCCTTATCTTGTATCTT 220
Query 146194 NNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGT 146253
||||| || ||| |||||||| || || ||||| || ||
Sbjct 221 TGCCTTCACATTTTCGACAGTATTTGTCGGTTCAACTTCTAGGGTTATAGTTTTTCCGGT 280
Query 146254 TAATGTTTTAATGAATATTTGCAT 146277
||||||||||| || ||||||||
Sbjct 281 TAATGTTTTAACAAAAATTTGCAT 304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740585771676160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |