Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq171037 122 1e-22 seq32333 122 1e-22 seq270304 96.9 5e-15 >seq171037 Length=1136 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || || ||||||| |||| || |||||||||||||| ||||||||||| || Sbjct 1015 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 956 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | || || |||| ||||||||| |||||||| |||| |||||| || || ||| Sbjct 955 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 896 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||||||||| Sbjct 895 ATTCCTTCTTTATCTTG 879 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | || | ||| | ||| || ||||| ||||| |||||||| Sbjct 787 CCACCACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGAT 728 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || |||| ||| || | |||||||||||||||||| | ||||| ||||| || ||| Sbjct 727 AGGGTCCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGA 668 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 667 ATACCTTCCTTGTCTTG 651 >seq32333 Length=4216 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || || ||||||| |||| || |||||||||||||| ||||||||||| || Sbjct 3761 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 3820 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | || || |||| ||||||||| |||||||| |||| |||||| || || ||| Sbjct 3821 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 3880 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||||||||| Sbjct 3881 ATTCCTTCTTTATCTTG 3897 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | || | ||| | ||| || ||||| ||||| |||||||| Sbjct 3989 CCACCACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGAT 4048 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || |||| ||| || | |||||||||||||||||| | ||||| ||||| || ||| Sbjct 4049 AGGGTCCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGA 4108 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 4109 ATACCTTCCTTGTCTTG 4125 >seq270304 Length=645 Score = 96.9 bits (106), Expect = 5e-15 Identities = 139/204 (68%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 146074 ATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTG 146133 ||| | ||||||||| || ||||||||| || ||||| || | | ||| || | || Sbjct 101 ATGAAGAGTAGATTCCTTTTGTATATTATAGTCAGAAAGTGTACGACCATCTTCAAGCTG 160 Query 146134 TTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNN 146193 |||||||| ||||| | ||||||||||| | ||||| ||||| |||||||| Sbjct 161 CTTTCCAGCGAAAATAAGCCTTTGCTGATCTGAGGGAATACCTTCCTTATCTTGTATCTT 220 Query 146194 NNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGT 146253 ||||| || ||| |||||||| || || ||||| || || Sbjct 221 TGCCTTCACATTTTCGACAGTATTTGTCGGTTCAACTTCTAGGGTTATAGTTTTTCCGGT 280 Query 146254 TAATGTTTTAATGAATATTTGCAT 146277 ||||||||||| || |||||||| Sbjct 281 TAATGTTTTAACAAAAATTTGCAT 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740585771676160