Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq157544 93.3 3e-14 seq171037 84.2 1e-11 seq32333 84.2 1e-11 >seq157544 Length=1252 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || || |||| ||| ||| || || ||||||||||| ||||| || | || Sbjct 1244 AGGACAAGATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCC 1185 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| |||||||| ||||| || |||||||| || || | || |||||| || Sbjct 1184 TCTAGCTGTTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCC 1125 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| | || |||||| |||| |||| || || || | ||||| || Sbjct 1124 TGAAT-TTTAGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGATAGT 1066 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 || || || || || || || || || ||||||| Sbjct 1065 CTTTCCAGTAAGGGTCTTTACGAATATTTGCATCG 1031 >seq171037 Length=1136 Score = 84.2 bits (92), Expect = 1e-11 Identities = 154/222 (69%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 || || ||||||||||| |||||| ||||||||| || || || ||||| | ||| Sbjct 1006 AGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGA 947 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 ||| || | || || || || ||||| | || |||||||| ||| | | || Sbjct 946 CTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCT 887 Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC----GATTCGACGTCCAC 34347 || || || ||| ||||| ||| | | || | | ||| |||||||| |||| Sbjct 886 TTATCTTGGAT-TTTAGCTTT-GAT--GTTTTCCACTGTGTCACTTGATTCGACTTCCAA 831 Query 34348 CGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || ||||| || |||||||| ||||| |||||||| Sbjct 830 AGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 789 >seq32333 Length=4216 Score = 84.2 bits (92), Expect = 1e-11 Identities = 154/222 (69%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 || || ||||||||||| |||||| ||||||||| || || || ||||| | ||| Sbjct 3770 AGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGA 3829 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 ||| || | || || || || ||||| | || |||||||| ||| | | || Sbjct 3830 CTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCT 3889 Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC----GATTCGACGTCCAC 34347 || || || ||| ||||| ||| | | || | | ||| |||||||| |||| Sbjct 3890 TTATCTTGGAT-TTTAGCTTT-GAT--GTTTTCCACTGTGTCACTTGATTCGACTTCCAA 3945 Query 34348 CGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || ||||| || |||||||| ||||| |||||||| Sbjct 3946 AGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 3987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321826201858880