Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq157544 93.3 3e-14
seq171037 84.2 1e-11
seq32333 84.2 1e-11
>seq157544
Length=1252
Score = 93.3 bits (102), Expect = 3e-14
Identities = 151/215 (70%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| || || |||| ||| ||| || || ||||||||||| ||||| || | ||
Sbjct 1244 AGGACAAGATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCC 1185
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | ||| |||||||| ||||| || |||||||| || || | || |||||| ||
Sbjct 1184 TCTAGCTGTTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCC 1125
Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
|| ||| ||||| | || |||||| |||| |||| || || || | ||||| ||
Sbjct 1124 TGAAT-TTTAGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGATAGT 1066
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391
|| || || || || || || || || |||||||
Sbjct 1065 CTTTCCAGTAAGGGTCTTTACGAATATTTGCATCG 1031
>seq171037
Length=1136
Score = 84.2 bits (92), Expect = 1e-11
Identities = 154/222 (69%), Gaps = 8/222 (4%)
Strand=Plus/Minus
Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231
|| || ||||||||||| |||||| ||||||||| || || || ||||| | |||
Sbjct 1006 AGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGA 947
Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291
||| || | || || || || ||||| | || |||||||| ||| | | ||
Sbjct 946 CTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCT 887
Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC----GATTCGACGTCCAC 34347
|| || || ||| ||||| ||| | | || | | ||| |||||||| ||||
Sbjct 886 TTATCTTGGAT-TTTAGCTTT-GAT--GTTTTCCACTGTGTCACTTGATTCGACTTCCAA 831
Query 34348 CGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| || || ||||| || |||||||| ||||| ||||||||
Sbjct 830 AGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 789
>seq32333
Length=4216
Score = 84.2 bits (92), Expect = 1e-11
Identities = 154/222 (69%), Gaps = 8/222 (4%)
Strand=Plus/Plus
Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231
|| || ||||||||||| |||||| ||||||||| || || || ||||| | |||
Sbjct 3770 AGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGA 3829
Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291
||| || | || || || || ||||| | || |||||||| ||| | | ||
Sbjct 3830 CTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCT 3889
Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC----GATTCGACGTCCAC 34347
|| || || ||| ||||| ||| | | || | | ||| |||||||| ||||
Sbjct 3890 TTATCTTGGAT-TTTAGCTTT-GAT--GTTTTCCACTGTGTCACTTGATTCGACTTCCAA 3945
Query 34348 CGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| || || ||||| || |||||||| ||||| ||||||||
Sbjct 3946 AGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 3987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 321826201858880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |