Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq110960 168 6e-37 seq75644 167 2e-36 >seq110960 Length=1818 Score = 168 bits (186), Expect = 6e-37 Identities = 575/890 (65%), Gaps = 52/890 (6%) Strand=Plus/Minus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 |||||| ||||| | ||| | ||| |||||||| || ||||| || || | || ||||| Sbjct 1236 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGATATT 1177 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAA---CAATAGTAT-TTATCGCATCCCAATTCCA 16058 |||||||||||||| ||||| | | | ||| || || ||| | || | || Sbjct 1176 CTCCATAAAATCAAAGGGATTCTCAGCATTCCAA----ATCTTCTCGTAACCAAGCTCGT 1121 Query 16059 ACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTA 16118 ||| || | ||| || |||||||| | || | ||| | |||||||||||| || | Sbjct 1120 ACAGCAAGCGATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAA 1061 Query 16119 TTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178 | | ||| || || | || || | || ||| |||||||| | | || || ||| Sbjct 1060 TCAGTTTGACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGA 1001 Query 16179 TTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAG-TGTTTAAACATTATACAA 16237 |||| | || || | ||| ||| ||| | | ||||| |||| | ||| Sbjct 1000 ATATAGCATAAAC-ACGTTCCTTATCGGGCTTTTTCACGATATGTTTGAACAGAAGGCAA 942 Query 16238 GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCT 16297 ||||| || || | |||||||| | ||| || | || || || || | ||| Sbjct 941 GCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCT 882 Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357 ||||| || || || || |||| ||||||||||| ||||| || |||||||| | Sbjct 881 GGCATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACT 822 Query 16358 CCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatc 16417 ||||| | ||| ||||| || | | ||||| | ||||| ||| || | ||| Sbjct 821 CCTTCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCACCAATC 762 Query 16418 cattttttagcccaatttgc-tttttgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476 || | ||||| | || ||||||| || |||| | | |||| || |||||||| Sbjct 761 CAGTCAAGGGCCCACTGCGCCTTTTTGTGTA-CACAATCGAGGTTCGTGATGGCATTAAA 703 Query 16477 TAAATAAttttt-------------------------ttCTTTGCTA-----TCTAAAAT 16506 || ||| | | | |||| | | ||| || Sbjct 702 CAAGAAATCTCTAAGAAAACTTAGATTTAAAAATACATACTTTTCCACTGGATCTCGGAT 643 Query 16507 ATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAA 16566 ||| ||||| || || | || |||||| || ||||||||||| || ||||| ||||| | Sbjct 642 ATACGTATCAATCAGAAGACAATACATCTCCGAATGAATATTTTCTATTGCCATCTGCAT 583 Query 16567 ACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAGTAAAACCTTTCTGCTAAGT 16625 || |||||||||| | |||| || ||| ||||| || | ||||| ||| | | | Sbjct 582 GCCGTAAAAGCATCGGACCTCGGGTACTTGAACTTCTTGACT-AAACCGTTCCACCAGAT 524 Query 16626 TTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttt 16685 |||| || |||||||| || || || || || || || | || |||||| Sbjct 523 TTTCCAGCACAATTCCATCACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAA---- 468 Query 16686 tttCGTTAT-CTG---AAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCT 16741 | ||| | | ||| |||| ||| | || ||||| || ||||| |||||| Sbjct 467 TGTCGCTCTCCTGGCTTAAGTGCATCCCATTGCACAATGTCTTTGGACAAATCAACCTCT 408 Query 16742 TCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791 || || | ||| || ||||| ||||||||||| || | || ||| || || Sbjct 407 TCAACTGACCAGAATGAAGCGACAGCCTTTTTGTAAAATTGCCAGATATC 358 >seq75644 Length=2520 Score = 167 bits (184), Expect = 2e-36 Identities = 575/889 (65%), Gaps = 51/889 (6%) Strand=Plus/Plus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 |||||| ||||| | ||| | ||| |||||||| |||||||| || || | || ||||| Sbjct 583 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATT 642 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAA---CAATAGTAT-TTATCGCATCCCAATTCCA 16058 |||||||||||||| ||||| | | | ||| || || ||| | || | || Sbjct 643 CTCCATAAAATCAAAGGGATTCTCAGCATTCCAA----ATCTTCTCGTAACCAAGCTCGT 698 Query 16059 ACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTA 16118 | | || | ||| || |||||||| | || | ||| | |||||||||||| || | Sbjct 699 ATAGCAAGCGATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAA 758 Query 16119 TTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178 | | ||| || || | || || | || ||| |||||||| | | || || ||| Sbjct 759 TCAGTTTTACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGA 818 Query 16179 TTATATCTCTTACTACACTATTTAACGGAGGGTTT-AATAAGTGTTTAAACATTATACAA 16237 |||| | | | || | ||| ||| ||| | | ||||| |||| | ||| Sbjct 819 ATATAGC-ATAAACACGTTCCTTATCGGGCTTTTTCACGATATGTTTGAACAGAAGGCAA 877 Query 16238 GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCT 16297 ||||| || || | |||||||| | ||| || | || || || || | ||| Sbjct 878 GCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCT 937 Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357 ||||| || || || || |||| ||||||||||| ||||| || |||||||| | Sbjct 938 GGCATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACT 997 Query 16358 CCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatc 16417 ||||| | ||| ||||| || | | ||||| | ||||| ||| || | ||| Sbjct 998 CCTTCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCACCAATC 1057 Query 16418 cattttttagcccaatttg-ctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476 || | ||||| | | |||||||| | ||||| | | ||| || |||||||| Sbjct 1058 CAGTCAAGGGCCCACTGCGCCTTTTTGTGT-ACACAATCGAGGTTTGTGATGGCATTAAA 1116 Query 16477 TAAATAAt----------------ttt--------tttCTTTGC-----TATCTAAAATA 16507 || ||| ||| | |||| | |||| ||| Sbjct 1117 CAAGAAATCTCTAAGAAACTTAGATTTAAAAATACATACTTTTCCACTGGATCTCGGATA 1176 Query 16508 TAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAA 16567 || ||||| || || | || |||||| || || |||||||| || ||||| ||||| | Sbjct 1177 TATGTATCAATCAGAAGACAATACATCTCCGAGTGAATATTTTCTATTGCCATCTGCATG 1236 Query 16568 CCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAGTAAAACCTTTCTGCTAAGTT 16626 || |||||||||| | |||| || ||| ||||| || | ||||| ||| | | || Sbjct 1237 CCGTAAAAGCATCGGACCTCGGGTACTTGAACTTCTTGACT-AAACCGTTCCACCAGATT 1295 Query 16627 TTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttttt 16686 ||| || |||||||| || || || || || || || | || |||||| | Sbjct 1296 TTCCAGCACAATTCCATCACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAA----T 1351 Query 16687 ttCGTTAT-CTG---AAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTT 16742 ||| | | ||| |||| ||| | || ||||| || ||||| ||||||| Sbjct 1352 GTCGCTCTCCTGGCTTAAGTGCATCCCATTGCACAATGTCTTTGGACAAATCAACCTCTT 1411 Query 16743 CTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791 | || | ||| || ||||||||||||||||| || | || ||| || || Sbjct 1412 CAACTGACCAGAATGAAGCAACAGCCTTTTTGTAAAATTGCCAGATATC 1460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460682776602800