Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq110960 168 6e-37
seq75644 167 2e-36
>seq110960
Length=1818
Score = 168 bits (186), Expect = 6e-37
Identities = 575/890 (65%), Gaps = 52/890 (6%)
Strand=Plus/Minus
Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002
|||||| ||||| | ||| | ||| |||||||| || ||||| || || | || |||||
Sbjct 1236 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGATATT 1177
Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAA---CAATAGTAT-TTATCGCATCCCAATTCCA 16058
|||||||||||||| ||||| | | | ||| || || ||| | || | ||
Sbjct 1176 CTCCATAAAATCAAAGGGATTCTCAGCATTCCAA----ATCTTCTCGTAACCAAGCTCGT 1121
Query 16059 ACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTA 16118
||| || | ||| || |||||||| | || | ||| | |||||||||||| || |
Sbjct 1120 ACAGCAAGCGATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAA 1061
Query 16119 TTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178
| | ||| || || | || || | || ||| |||||||| | | || || |||
Sbjct 1060 TCAGTTTGACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGA 1001
Query 16179 TTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAG-TGTTTAAACATTATACAA 16237
|||| | || || | ||| ||| ||| | | ||||| |||| | |||
Sbjct 1000 ATATAGCATAAAC-ACGTTCCTTATCGGGCTTTTTCACGATATGTTTGAACAGAAGGCAA 942
Query 16238 GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCT 16297
||||| || || | |||||||| | ||| || | || || || || | |||
Sbjct 941 GCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCT 882
Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357
||||| || || || || |||| ||||||||||| ||||| || |||||||| |
Sbjct 881 GGCATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACT 822
Query 16358 CCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatc 16417
||||| | ||| ||||| || | | ||||| | ||||| ||| || | |||
Sbjct 821 CCTTCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCACCAATC 762
Query 16418 cattttttagcccaatttgc-tttttgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476
|| | ||||| | || ||||||| || |||| | | |||| || ||||||||
Sbjct 761 CAGTCAAGGGCCCACTGCGCCTTTTTGTGTA-CACAATCGAGGTTCGTGATGGCATTAAA 703
Query 16477 TAAATAAttttt-------------------------ttCTTTGCTA-----TCTAAAAT 16506
|| ||| | | | |||| | | ||| ||
Sbjct 702 CAAGAAATCTCTAAGAAAACTTAGATTTAAAAATACATACTTTTCCACTGGATCTCGGAT 643
Query 16507 ATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAA 16566
||| ||||| || || | || |||||| || ||||||||||| || ||||| ||||| |
Sbjct 642 ATACGTATCAATCAGAAGACAATACATCTCCGAATGAATATTTTCTATTGCCATCTGCAT 583
Query 16567 ACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAGTAAAACCTTTCTGCTAAGT 16625
|| |||||||||| | |||| || ||| ||||| || | ||||| ||| | | |
Sbjct 582 GCCGTAAAAGCATCGGACCTCGGGTACTTGAACTTCTTGACT-AAACCGTTCCACCAGAT 524
Query 16626 TTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttt 16685
|||| || |||||||| || || || || || || || | || ||||||
Sbjct 523 TTTCCAGCACAATTCCATCACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAA---- 468
Query 16686 tttCGTTAT-CTG---AAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCT 16741
| ||| | | ||| |||| ||| | || ||||| || ||||| ||||||
Sbjct 467 TGTCGCTCTCCTGGCTTAAGTGCATCCCATTGCACAATGTCTTTGGACAAATCAACCTCT 408
Query 16742 TCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791
|| || | ||| || ||||| ||||||||||| || | || ||| || ||
Sbjct 407 TCAACTGACCAGAATGAAGCGACAGCCTTTTTGTAAAATTGCCAGATATC 358
>seq75644
Length=2520
Score = 167 bits (184), Expect = 2e-36
Identities = 575/889 (65%), Gaps = 51/889 (6%)
Strand=Plus/Plus
Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002
|||||| ||||| | ||| | ||| |||||||| |||||||| || || | || |||||
Sbjct 583 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATT 642
Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAA---CAATAGTAT-TTATCGCATCCCAATTCCA 16058
|||||||||||||| ||||| | | | ||| || || ||| | || | ||
Sbjct 643 CTCCATAAAATCAAAGGGATTCTCAGCATTCCAA----ATCTTCTCGTAACCAAGCTCGT 698
Query 16059 ACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTA 16118
| | || | ||| || |||||||| | || | ||| | |||||||||||| || |
Sbjct 699 ATAGCAAGCGATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAA 758
Query 16119 TTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178
| | ||| || || | || || | || ||| |||||||| | | || || |||
Sbjct 759 TCAGTTTTACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGA 818
Query 16179 TTATATCTCTTACTACACTATTTAACGGAGGGTTT-AATAAGTGTTTAAACATTATACAA 16237
|||| | | | || | ||| ||| ||| | | ||||| |||| | |||
Sbjct 819 ATATAGC-ATAAACACGTTCCTTATCGGGCTTTTTCACGATATGTTTGAACAGAAGGCAA 877
Query 16238 GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCT 16297
||||| || || | |||||||| | ||| || | || || || || | |||
Sbjct 878 GCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCT 937
Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357
||||| || || || || |||| ||||||||||| ||||| || |||||||| |
Sbjct 938 GGCATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACT 997
Query 16358 CCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatc 16417
||||| | ||| ||||| || | | ||||| | ||||| ||| || | |||
Sbjct 998 CCTTCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCACCAATC 1057
Query 16418 cattttttagcccaatttg-ctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476
|| | ||||| | | |||||||| | ||||| | | ||| || ||||||||
Sbjct 1058 CAGTCAAGGGCCCACTGCGCCTTTTTGTGT-ACACAATCGAGGTTTGTGATGGCATTAAA 1116
Query 16477 TAAATAAt----------------ttt--------tttCTTTGC-----TATCTAAAATA 16507
|| ||| ||| | |||| | |||| |||
Sbjct 1117 CAAGAAATCTCTAAGAAACTTAGATTTAAAAATACATACTTTTCCACTGGATCTCGGATA 1176
Query 16508 TAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAA 16567
|| ||||| || || | || |||||| || || |||||||| || ||||| ||||| |
Sbjct 1177 TATGTATCAATCAGAAGACAATACATCTCCGAGTGAATATTTTCTATTGCCATCTGCATG 1236
Query 16568 CCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAGTAAAACCTTTCTGCTAAGTT 16626
|| |||||||||| | |||| || ||| ||||| || | ||||| ||| | | ||
Sbjct 1237 CCGTAAAAGCATCGGACCTCGGGTACTTGAACTTCTTGACT-AAACCGTTCCACCAGATT 1295
Query 16627 TTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttttt 16686
||| || |||||||| || || || || || || || | || |||||| |
Sbjct 1296 TTCCAGCACAATTCCATCACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAA----T 1351
Query 16687 ttCGTTAT-CTG---AAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTT 16742
||| | | ||| |||| ||| | || ||||| || ||||| |||||||
Sbjct 1352 GTCGCTCTCCTGGCTTAAGTGCATCCCATTGCACAATGTCTTTGGACAAATCAACCTCTT 1411
Query 16743 CTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791
| || | ||| || ||||||||||||||||| || | || ||| || ||
Sbjct 1412 CAACTGACCAGAATGAAGCAACAGCCTTTTTGTAAAATTGCCAGATATC 1460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 460682776602800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |