Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq150668 149 6e-31 seq75644 131 2e-25 seq110960 122 8e-23 >seq150668 Length=1318 Score = 149 bits (164), Expect = 6e-31 Identities = 581/907 (64%), Gaps = 40/907 (4%) Strand=Plus/Minus Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 || ||||| | ||| | || || || || || ||||| || ||||| |||||||||||| Sbjct 1163 TGGTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATTTTCC 1104 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 14035 ||||||||||| |||||| || | | | || | |||| ||||| | || | Sbjct 1103 ATAAAATCAAACGGATTTTCGGAGTTCCAAATCTTCTTGTAACCAAGTTCAGACAGAAGA 1044 Query 14036 CTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 14095 | ||| || | ||||| || || || |||| | | | |||||||| || || || | Sbjct 1043 CGATCAGCCACAAACTCTATGTAGCGACACATAAGAGCGCAATTCATCCCAATGAGACTG 984 Query 14096 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA--A 14153 || || | || || | |||||||| || || || ||||| | || ||| | Sbjct 983 ACGGGCAAAGCATCAGTGAGAAATTCTTGCTCAATTTTTACTGCCTCCTCCATTATAGAA 924 Query 14154 TCG-TAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAA 14212 | | | | | || | | | | | | ||| ||||| | | || || ||| Sbjct 923 TGGATCCTCTTCTCTTCCGGTTTTGCAA---TGATATGCTTAAATAGGAGGCAAGCGAAA 867 Query 14213 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 14272 || ||||| || |||||||||| ||| ||||| || || || || | || ||||| Sbjct 866 TCGCAATGCAGTCCCTCATCTCGACTTATAAGCTCATTGCTGAAGGTGAGGCCGGGCATA 807 Query 14273 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 14332 | || || ||||| | ||||||||| || || || || || ||||| | || || Sbjct 806 AGACCACGCTTTTTAAGCCAAAATATCGCGGCAAAGCTGCCTGAGAAGAAAACACCTTCT 747 Query 14333 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATATCCATTT 14391 || || ||||| ||| | ||||| || | | ||| | | || | ||||| | Sbjct 746 ACAGCTGCAAAAGCTGCGACACGTTCAGAGAATGGAGAATTTGTATCTCCA-ATCCAGTC 688 Query 14392 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT- 14450 |||||||| | |||||| | | | |||| | | || ||||||| ||| Sbjct 687 GAGAGCCCATTGCGCCTTTTTTCTGACGCACTCCAAGTTGCCGATTGCATTAAGCAAAAA 628 Query 14451 GTTCCTTCTC---------TTTAG-------TACTT-------GAA------ATGTATGT 14481 || ||| | | | || ||||| ||| ||||| || Sbjct 627 GTCCCTACACAACAAAAGATATATGCCAACTTACTTTTCAACAGAATCTCTGATGTAAGT 568 Query 14482 ATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCAT 14540 ||||||||| ||| | ||||||||||| ||||| || || ||||| || || | |||| Sbjct 567 ATCAATAAG-AAGAGAGTACATTTCAGAATGTATATTCTCAATAGCGATTTGTATGCCAT 509 Query 14541 AAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCAT 14600 ||||||| | | |||||| || || ||| | ||| | ||| | |||||| Sbjct 508 AAAAACAGCGAACTTCTGGGATCTGAACTTCTTGGCTAAACCGCTCGATAAGATTTTCCA 449 Query 14601 TAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTT 14660 |||||| ||||||||||| || |||||||| | | || | |||| | ||||| Sbjct 448 AAACTATCCCATCACTAGCAGCGAAAAATGCAAGAACGTAAGATAGAAAGCGTCGCTCTC 389 Query 14661 CATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCC 14720 | | ||| ||||||| | || || ||||| | ||| ||||| || ||||||| Sbjct 388 CCGGCTTAAGTGAATTCCAATGAGGAAAGTCTTTAGACAAATCAACTTCCTCTACTGTCC 329 Query 14721 AAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAA 14780 | || ||| |||||||| ||||| | | ||| || || ||| || ||||| | Sbjct 328 AGAAGGAAGCCACAGCTTTCTTATAGAATTTCCAAATGTCAGGATACTCAATGGGAAACA 269 Query 14781 CTACAAA 14787 |||||| Sbjct 268 TTACAAA 262 >seq75644 Length=2520 Score = 131 bits (144), Expect = 2e-25 Identities = 293/439 (67%), Gaps = 6/439 (1%) Strand=Plus/Plus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 |||||| ||||| | ||| | || ||||||||||| ||||| || || | || ||||| Sbjct 583 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATT 642 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAG 14031 |||||||||||||| ||||| | | | | || || |||| || || |||| Sbjct 643 CTCCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAACCAAGCTCGTATAG 702 Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091 || | ||| |||| || || | || | |||| | |||||| ||||| || || || Sbjct 703 CAAGCGATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATCAG 762 Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 |||||| || | | | || || | |||||||| || ||||| || | || Sbjct 763 TTTTACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATAT 822 Query 14152 AATCGTAATAATTTCATTAGAAGGAGGATATTT---TAGATGTTTAAAAATTAAACACGC 14208 | || | ||| || | || | ||| | |||||| || | | || || Sbjct 823 AGCATAAACACGTTCCTT---ATCGGGCTTTTTCACGATATGTTTGAACAGAAGGCAAGC 879 Query 14209 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 14268 ||| || |||||||| || || | |||||||||||| || || || || ||||| Sbjct 880 AAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGG 939 Query 14269 CATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCC 14328 ||||| || || || || | ||||||||| | || || ||||||||||| | ||| Sbjct 940 CATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCC 999 Query 14329 CTCAACTGCAGCAAACGCT 14347 || | ||||||||| ||| Sbjct 1000 TTCGATTGCAGCAAAGGCT 1018 >seq110960 Length=1818 Score = 122 bits (134), Expect = 8e-23 Identities = 291/439 (66%), Gaps = 6/439 (1%) Strand=Plus/Minus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 |||||| ||||| | ||| | || ||||||||||| ||||| || || | || ||||| Sbjct 1236 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGATATT 1177 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAG 14031 |||||||||||||| ||||| | | | | || || |||| || || | || Sbjct 1176 CTCCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAACCAAGCTCGTACAG 1117 Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091 || | ||| |||| || || | || | |||| | |||||| ||||| || || || Sbjct 1116 CAAGCGATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAATCAG 1057 Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 ||| || || | | | || || | |||||||| || ||||| || | || Sbjct 1056 TTTGACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATAT 997 Query 14152 AATCGTAATAATTTCATTAGAAGGAGGATATTTTAG---ATGTTTAAAAATTAAACACGC 14208 | || | ||| ||| || | ||| | |||||| || | | || || Sbjct 996 AGCATAAACACGTTCCTTATCGGGC---TTTTTCACGATATGTTTGAACAGAAGGCAAGC 940 Query 14209 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 14268 ||| || |||||||| || || | |||||||||||| || || || || ||||| Sbjct 939 AAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGG 880 Query 14269 CATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCC 14328 ||||| || || || || | ||||||||| | || || ||||||||||| | ||| Sbjct 879 CATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCC 820 Query 14329 CTCAACTGCAGCAAACGCT 14347 || | ||||||||| ||| Sbjct 819 TTCGATTGCAGCAAAGGCT 801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480437935210640