Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq150668 149 6e-31
seq75644 131 2e-25
seq110960 122 8e-23
>seq150668
Length=1318
Score = 149 bits (164), Expect = 6e-31
Identities = 581/907 (64%), Gaps = 40/907 (4%)
Strand=Plus/Minus
Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975
|| ||||| | ||| | || || || || || ||||| || ||||| ||||||||||||
Sbjct 1163 TGGTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATTTTCC 1104
Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 14035
||||||||||| |||||| || | | | || | |||| ||||| | || |
Sbjct 1103 ATAAAATCAAACGGATTTTCGGAGTTCCAAATCTTCTTGTAACCAAGTTCAGACAGAAGA 1044
Query 14036 CTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 14095
| ||| || | ||||| || || || |||| | | | |||||||| || || || |
Sbjct 1043 CGATCAGCCACAAACTCTATGTAGCGACACATAAGAGCGCAATTCATCCCAATGAGACTG 984
Query 14096 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA--A 14153
|| || | || || | |||||||| || || || ||||| | || ||| |
Sbjct 983 ACGGGCAAAGCATCAGTGAGAAATTCTTGCTCAATTTTTACTGCCTCCTCCATTATAGAA 924
Query 14154 TCG-TAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAA 14212
| | | | | || | | | | | | ||| ||||| | | || || |||
Sbjct 923 TGGATCCTCTTCTCTTCCGGTTTTGCAA---TGATATGCTTAAATAGGAGGCAAGCGAAA 867
Query 14213 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 14272
|| ||||| || |||||||||| ||| ||||| || || || || | || |||||
Sbjct 866 TCGCAATGCAGTCCCTCATCTCGACTTATAAGCTCATTGCTGAAGGTGAGGCCGGGCATA 807
Query 14273 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 14332
| || || ||||| | ||||||||| || || || || || ||||| | || ||
Sbjct 806 AGACCACGCTTTTTAAGCCAAAATATCGCGGCAAAGCTGCCTGAGAAGAAAACACCTTCT 747
Query 14333 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATATCCATTT 14391
|| || ||||| ||| | ||||| || | | ||| | | || | ||||| |
Sbjct 746 ACAGCTGCAAAAGCTGCGACACGTTCAGAGAATGGAGAATTTGTATCTCCA-ATCCAGTC 688
Query 14392 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT- 14450
|||||||| | |||||| | | | |||| | | || ||||||| |||
Sbjct 687 GAGAGCCCATTGCGCCTTTTTTCTGACGCACTCCAAGTTGCCGATTGCATTAAGCAAAAA 628
Query 14451 GTTCCTTCTC---------TTTAG-------TACTT-------GAA------ATGTATGT 14481
|| ||| | | | || ||||| ||| ||||| ||
Sbjct 627 GTCCCTACACAACAAAAGATATATGCCAACTTACTTTTCAACAGAATCTCTGATGTAAGT 568
Query 14482 ATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCAT 14540
||||||||| ||| | ||||||||||| ||||| || || ||||| || || | ||||
Sbjct 567 ATCAATAAG-AAGAGAGTACATTTCAGAATGTATATTCTCAATAGCGATTTGTATGCCAT 509
Query 14541 AAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCAT 14600
||||||| | | |||||| || || ||| | ||| | ||| | ||||||
Sbjct 508 AAAAACAGCGAACTTCTGGGATCTGAACTTCTTGGCTAAACCGCTCGATAAGATTTTCCA 449
Query 14601 TAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTT 14660
|||||| ||||||||||| || |||||||| | | || | |||| | |||||
Sbjct 448 AAACTATCCCATCACTAGCAGCGAAAAATGCAAGAACGTAAGATAGAAAGCGTCGCTCTC 389
Query 14661 CATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCC 14720
| | ||| ||||||| | || || ||||| | ||| ||||| || |||||||
Sbjct 388 CCGGCTTAAGTGAATTCCAATGAGGAAAGTCTTTAGACAAATCAACTTCCTCTACTGTCC 329
Query 14721 AAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAA 14780
| || ||| |||||||| ||||| | | ||| || || ||| || ||||| |
Sbjct 328 AGAAGGAAGCCACAGCTTTCTTATAGAATTTCCAAATGTCAGGATACTCAATGGGAAACA 269
Query 14781 CTACAAA 14787
||||||
Sbjct 268 TTACAAA 262
>seq75644
Length=2520
Score = 131 bits (144), Expect = 2e-25
Identities = 293/439 (67%), Gaps = 6/439 (1%)
Strand=Plus/Plus
Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971
|||||| ||||| | ||| | || ||||||||||| ||||| || || | || |||||
Sbjct 583 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATT 642
Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAG 14031
|||||||||||||| ||||| | | | | || || |||| || || ||||
Sbjct 643 CTCCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAACCAAGCTCGTATAG 702
Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091
|| | ||| |||| || || | || | |||| | |||||| ||||| || || ||
Sbjct 703 CAAGCGATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATCAG 762
Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151
|||||| || | | | || || | |||||||| || ||||| || | ||
Sbjct 763 TTTTACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATAT 822
Query 14152 AATCGTAATAATTTCATTAGAAGGAGGATATTT---TAGATGTTTAAAAATTAAACACGC 14208
| || | ||| || | || | ||| | |||||| || | | || ||
Sbjct 823 AGCATAAACACGTTCCTT---ATCGGGCTTTTTCACGATATGTTTGAACAGAAGGCAAGC 879
Query 14209 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 14268
||| || |||||||| || || | |||||||||||| || || || || |||||
Sbjct 880 AAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGG 939
Query 14269 CATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCC 14328
||||| || || || || | ||||||||| | || || ||||||||||| | |||
Sbjct 940 CATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCC 999
Query 14329 CTCAACTGCAGCAAACGCT 14347
|| | ||||||||| |||
Sbjct 1000 TTCGATTGCAGCAAAGGCT 1018
>seq110960
Length=1818
Score = 122 bits (134), Expect = 8e-23
Identities = 291/439 (66%), Gaps = 6/439 (1%)
Strand=Plus/Minus
Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971
|||||| ||||| | ||| | || ||||||||||| ||||| || || | || |||||
Sbjct 1236 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGATATT 1177
Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAG 14031
|||||||||||||| ||||| | | | | || || |||| || || | ||
Sbjct 1176 CTCCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAACCAAGCTCGTACAG 1117
Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091
|| | ||| |||| || || | || | |||| | |||||| ||||| || || ||
Sbjct 1116 CAAGCGATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAATCAG 1057
Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151
||| || || | | | || || | |||||||| || ||||| || | ||
Sbjct 1056 TTTGACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATAT 997
Query 14152 AATCGTAATAATTTCATTAGAAGGAGGATATTTTAG---ATGTTTAAAAATTAAACACGC 14208
| || | ||| ||| || | ||| | |||||| || | | || ||
Sbjct 996 AGCATAAACACGTTCCTTATCGGGC---TTTTTCACGATATGTTTGAACAGAAGGCAAGC 940
Query 14209 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 14268
||| || |||||||| || || | |||||||||||| || || || || |||||
Sbjct 939 AAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGG 880
Query 14269 CATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCC 14328
||||| || || || || | ||||||||| | || || ||||||||||| | |||
Sbjct 879 CATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCC 820
Query 14329 CTCAACTGCAGCAAACGCT 14347
|| | ||||||||| |||
Sbjct 819 TTCGATTGCAGCAAAGGCT 801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 480437935210640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |