Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq270304 91.5 1e-13
seq171037 91.5 1e-13
seq32333 87.8 1e-12
>seq270304
Length=645
Score = 91.5 bits (100), Expect = 1e-13
Identities = 160/232 (69%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 18095 TTATCCTCCC-CGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGT 18153
|||| | ||| || || | ||| || | ||||| || ||||| ||||| || || ||||
Sbjct 73 TTATGCCCCCACGAAGACGAAGAACTAGATGAAGAGTAGATTCCTTTTGTATATTATAGT 132
Query 18154 CGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCA 18213
| | | ||| || |||||| | || || || || | ||||| ||||| |||||
Sbjct 133 CAGAAAGTGTACGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTGATCTG 192
Query 18214 CGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCT 18273
||| | ||||||||||| || | | ||| || | | | ||||| | || |
Sbjct 193 AGGGAATACCTTCCTTATCTTGTATCTTTGCCTTCACATTTTCGACAGTATTTGTCGGTT 252
Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
| ||| | ||| || |||| ||||| |||||||| ||||||||||||||
Sbjct 253 CAACTTCTAGGGTTATAGTTTTTCCGGTTAATGTTTTAACAAAAATTTGCAT 304
>seq171037
Length=1136
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || || | ||| || | ||||| ||||| ||||| ||||| ||||| || |
Sbjct 787 CCACCACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGAT 728
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | | |||||| | |||||| || ||| | ||||| ||||||||||| ||
Sbjct 727 AGGGTCCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGA 668
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| |||||||| || ||| | ||| || | | | ||||||| | || |
Sbjct 667 ATACCTTCCTTGTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACT 608
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|||| || || | || || |||| |||||| ||||| |||||||||||
Sbjct 607 TCAAGAGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATTTT 558
>seq32333
Length=4216
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || || | ||| || | ||||| ||||| ||||| ||||| ||||| || |
Sbjct 3989 CCACCACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGAT 4048
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | | |||||| | |||||| || ||| | ||||| ||||||||||| ||
Sbjct 4049 AGGGTCCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGA 4108
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| |||||||| || ||| | ||| || | | | ||||||| | || |
Sbjct 4109 ATACCTTCCTTGTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACT 4168
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|||| || || | || || |||| |||||| ||||| |||||||||
Sbjct 4169 TCAAGAGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATT 4216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 377881211364510
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |