Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq171037 93.3 4e-14 seq32333 93.3 4e-14 >seq171037 Length=1136 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||||||||| | || ||||| || || || | || |||||||| || Sbjct 788 CATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAG 847 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| || |||| | || | ||||| | |||||||| | || |||||| Sbjct 848 TGACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCA 907 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGA 24986 |||||| ||||| | ||| || |||||||| ||||| Sbjct 908 GCAACGATTAATTTTTGCCGGAAAACAACTAGAAGA 943 >seq32333 Length=4216 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||||||||| | || ||||| || || || | || |||||||| || Sbjct 3988 CATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAG 3929 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| || |||| | || | ||||| | |||||||| | || |||||| Sbjct 3928 TGACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCA 3869 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGA 24986 |||||| ||||| | ||| || |||||||| ||||| Sbjct 3868 GCAACGATTAATTTTTGCCGGAAAACAACTAGAAGA 3833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416690977684160