Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq75644 159 3e-34
seq110960 156 4e-33
seq93010 129 5e-25
seq157544 120 3e-22
seq150668 102 7e-17
seq270304 91.5 1e-13
>seq75644
Length=2520
Score = 159 bits (176), Expect = 3e-34
Identities = 595/928 (64%), Gaps = 51/928 (5%)
Strand=Plus/Minus
Query 57528 AATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAA 57587
|| || ||| | ||||| || || || || ||||||| || || ||| | | ||||||
Sbjct 1499 AACCCTCGTCGGTTTGTGATATTGCCAATCCAATATCCGGATATCTGGCAATTTTACAAA 1440
Query 57588 AAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCT-GAGCGA 57646
||||| | || || || ||| | || ||||| || || |||| || || | | || |
Sbjct 1439 AAGGCTGTTGCTTCATTCTGGTCAGTTGAAGAGGTTGATTTGTCCAAAGACATTGTGCAA 1380
Query 57647 TTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGC 57706
| ||||| | || || | ||| || ||||||| |||| | || || |||||
Sbjct 1379 T-GGGATGCACTTAAGCCAGGAGAGCGACATTTTATATCGTACGTTCTCGCTTTCTTCGC 1321
Query 57707 CGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGT 57766
|| ||||| ||||| || ||| |||| ||| | ||| |||||||| |||||
Sbjct 1320 TGCCAGTGATGGAATTGTGCTGGAAAATCTGGTGGAACGGTTTAGTCAAGAAGTTCAAGT 1261
Query 57767 GACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAAT 57826
| |||| ||||||||||||| | || |||| || ||||| | || || || ||
Sbjct 1260 ACCCGAGGTCCGATGCTTTTACGGCATGCAGATGGCAATAGAAAATATTCACTCGGAGAT 1201
Query 57827 GTATTCGCTACTCATCGATACGTA----CGTGA-----AGGACAACGACG---------- 57867
||||| || || || ||||| || || || ||| || | |
Sbjct 1200 GTATTGTCTTCTGATTGATACATATATCCGAGATCCAGTGGAAAAGTATGTATTTTTAAA 1141
Query 57868 ----AGAAACGTAGA------CTGTTCAACGCGATCGAAACAATGCCCGCGATCG----- 57912
|| | |||| |||| || || ||| |||| || |||| |
Sbjct 1140 TCTAAGTTTCTTAGAGATTTCTTGTTTAATGCCATC---ACAA--ACCTCGATTGTGTAC 1086
Query 57913 CCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGA 57972
||| ||||| ||||| | | | ||||| | | | | ||||| ||||||
Sbjct 1085 ACAAAAAGGCGCAGTGGGCCCTTGACTGGATTGGTGATACAAAGTCAACGTTTGCCGAGC 1026
Query 57973 GGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATAT 58032
| | || || || || ||||||| | |||||||| ||||| |||||| | ||||
Sbjct 1025 GTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTTTGCGTCTATAT 966
Query 58033 TTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC 58092
||||| | ||||| || ||||||||||| ||| |||| || ||||| || | || |
Sbjct 965 TTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAGCAATGAACTTATTAGTC 906
Query 58093 GCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC 58152
||||||| || || || || || ||||| ||||| ||| | || || || || || |
Sbjct 905 GCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAAACATATCGTGAAAAAGC 846
Query 58153 CGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTG 58212
| ||| || | | | || ||| ||||| | | ||| ||||| | ||
Sbjct 845 CCGATAAGGAACGTGTTTATGCTATATTCAAGGAGGCATTGGAGATAGAAAAGGCTTTCT 786
Query 58213 TCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACA 58272
| | || ||| |||| || || | || |||||| |||| |||||| |||
Sbjct 785 TTAATGAGGCCTTACCCGTAAAACTGATTGGCATGAACTGTGATATGATGTGCCGTTACC 726
Query 58273 TTGAGTTTGTTGCCGACAGACTTTTGCT---CGAACT--GATTGGAGAGCGTCATTACAA 58327
| || ||||||||||| | ||||| ||| || | | |||| | || ||
Sbjct 725 TCGAATTTGTTGCCGA---TCGCTTGCTATACGAGCTTGGTTACGAGAAGAT--TTGGAA 671
Query 58328 CACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTT 58387
| | ||||| |||||||||||| | |||||| |||||||||| |||||||| ||
Sbjct 670 TGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGAGGGCAAAACAAACTTCTT 611
Query 58388 CGaaaaaaaaGTTAGCGAATATCAAAAA 58415
|| || ||| | ||||| ||||||
Sbjct 610 TGAGAAGCGTGTTGGGGAATACCAAAAA 583
>seq110960
Length=1818
Score = 156 bits (172), Expect = 4e-33
Identities = 593/926 (64%), Gaps = 46/926 (5%)
Strand=Plus/Plus
Query 57528 AATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAA 57587
|| || ||| | || || || || || || ||||||| || || ||| | | ||||||
Sbjct 319 AACCCTCGTCGGTTCGTGATATTGCCAATCCAATATCCGGATATCTGGCAATTTTACAAA 378
Query 57588 AAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCT-GAGCGA 57646
||||| | || || || ||| | || ||||| || || |||| || || | | || |
Sbjct 379 AAGGCTGTCGCTTCATTCTGGTCAGTTGAAGAGGTTGATTTGTCCAAAGACATTGTGCAA 438
Query 57647 TTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGC 57706
| ||||| | || || | ||| || ||||||| |||| | || || |||||
Sbjct 439 T-GGGATGCACTTAAGCCAGGAGAGCGACATTTTATATCGTACGTTCTCGCTTTCTTCGC 497
Query 57707 CGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGT 57766
|| ||||| ||||| || ||| |||| ||| | ||| |||||||| |||||
Sbjct 498 TGCCAGTGATGGAATTGTGCTGGAAAATCTGGTGGAACGGTTTAGTCAAGAAGTTCAAGT 557
Query 57767 GACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAAT 57826
| |||| ||||||||||||| | || |||| || ||||| | ||||| || ||
Sbjct 558 ACCCGAGGTCCGATGCTTTTACGGCATGCAGATGGCAATAGAAAATATTCATTCGGAGAT 617
Query 57827 GTATTCGCTACTCATCGATACGTA----CGTGA-----AGGACAACGACG-----AGAAA 57872
||||| || || || |||||||| || || ||| || | | |||
Sbjct 618 GTATTGTCTTCTGATTGATACGTATATCCGAGATCCAGTGGAAAAGTATGTATTTTTAAA 677
Query 57873 ----------CGTAGA------CTGTTCAACGCGATCGAAACAATGCCCGCGATCG---- 57912
| |||| |||| || || ||| || | || |||| |
Sbjct 678 TCTAAGTTTTCTTAGAGATTTCTTGTTTAATGCCATC---ACGA--ACCTCGATTGTGTA 732
Query 57913 -CCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAG 57971
||| ||||| ||||| | | | ||||| | | | | ||||| ||||||
Sbjct 733 CACAAAAAGGCGCAGTGGGCCCTTGACTGGATTGGTGATACAAAGTCAACGTTTGCCGAG 792
Query 57972 AGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATA 58031
| | || || || || ||||||| | |||||||| ||||| |||||| | |||
Sbjct 793 CGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTTTGCGTCTATA 852
Query 58032 TTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCG 58091
|||||| | ||||| || ||||||||||| ||| |||| || ||||| || | ||
Sbjct 853 TTTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAGCAATGAACTTATTAGT 912
Query 58092 CGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAA 58151
|||||||| || || || || || ||||| ||||| ||| | || || || || ||
Sbjct 913 CGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAAACATATCGTGAAAAAG 972
Query 58152 CCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTT 58211
|| ||| || | | | || ||| ||||| | | ||| ||||| | ||
Sbjct 973 CCCGATAAGGAACGTGTTTATGCTATATTCAAGGAGGCATTGGAGATAGAAAAGGCTTTC 1032
Query 58212 GTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTAC 58271
| | || ||| |||| || || | || |||||| |||| |||||| |||
Sbjct 1033 TTTAATGAGGCCTTACCCGTCAAACTGATTGGCATGAACTGTGATATGATGTGCCGCTAC 1092
Query 58272 ATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACA 58329
| || ||||||||||| | | || ||| || | | |||| | || ||
Sbjct 1093 CTCGAATTTGTTGCCGATCGCTTGCTGTACGAGCTTGGTTACGAGAAGAT--TTGGAATG 1150
Query 58330 CGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCG 58389
| | ||||| |||||||||||| | |||||| |||||||||| || ||||| || |
Sbjct 1151 CTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGAGGGCAAAACGAACTTCTTTG 1210
Query 58390 aaaaaaaaGTTAGCGAATATCAAAAA 58415
| || ||| | ||||| ||||||
Sbjct 1211 AGAAGCGTGTTGGGGAATACCAAAAA 1236
>seq93010
Length=2134
Score = 129 bits (142), Expect = 5e-25
Identities = 407/625 (65%), Gaps = 22/625 (4%)
Strand=Plus/Minus
Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401
||||| || | |||||| ||||| || ||||| || || || || || || | || ||
Sbjct 749 TCAACACGGCGCATAAACAGATCGGGGATCCAAAGGGCATAAAAAAGATCCCTAGCACGA 690
Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461
||||| ||| || |||||||| || || | ||| | | ||||| ||||||
Sbjct 689 ACCTCTTCTGCACCAGTGTTCTTGCGTAATTCTACGAAGGAGAGAATGTCCGTATGCCAT 630
Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGG 23521
|||||||| || | |||||| || || || ||| | || || |||||||||||||| ||
Sbjct 629 GGCTCGAGATAGATGGCAAAGGCACCAGGCCTCCTGTTACCACCCTGATCGACGTAGCGA 570
Query 23522 GCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCC--GCCTACGC 23579
|| || ||||| | || | || ||| ||||| || || ||||| || | || |
Sbjct 569 GCAGTATTGTTAAAAACACGTAACATTGGCACAAGTCCATTGGAGTAACCATTCGTA--C 512
Query 23580 CCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCG 23639
| || | | | ||| | | || | | ||||| | | ||| || || || |
Sbjct 511 CAGCAATATAGGTACCAGTGCCGCGTATGCAATGAACATTTACACCAATACCCCCAGCAC 452
Query 23640 ATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTT 23699
||| || || | || ||||| || || || || |||||||| |||||||| || |
Sbjct 451 TTTTAGAAATAAGGGCACATTGCCGGAGTGTATCATAAATGCCCTCAATGCTGTCATCCT 392
Query 23700 TGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTG 23759
| | | ||| | ||||| ||||| || | | || ||| | | || || |
Sbjct 391 TCATTGTGACAAGAAAACAGCTGGACATCTGGGGCCTTGGTGTACCAGAATTAAAGAGAG 332
Query 23760 TCGGGCTGGCGTGCGTAAAGTATCCA-TTC---GACATTAGATTGTACGTGTCGATGGCG 23815
| ||| ||||| ||||| ||| ||| ||||| | ||||| || || | |
Sbjct 331 TGGGGGAAGCGTGAGTAAA----CCACTTCAAGGACATCAAGTTGTAGGTTTCACAGACT 276
Query 23816 GCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTC-- 23873
|| || ||||| || ||| ||||| || | ||| | ||||| ||| | ||||| |
Sbjct 275 GCCTCTATGTCATCAAAGTGAATACCAATTGAGACTCTCATCAGCATATGCTGAGGACGT 216
Query 23874 TCTCGACCGTGACGCCGTTA---ATTTTGAACAGATATGAACGTTGCATCGTTTTAAATC 23930
|| || | | | ||| ||||| | |||||||| | | || || ||||| |
Sbjct 215 TCATGAACTTTA-----TTATCGATTTTAAGAAGATATGAGTGCTCCAATGTCTTAAAGC 161
Query 23931 CAAAATAGTCATAGTTAAAGTCACG 23955
|||| || | ||||| || |||||
Sbjct 160 CAAAGTAATTGTAGTTGAAATCACG 136
>seq157544
Length=1252
Score = 120 bits (132), Expect = 3e-22
Identities = 163/226 (72%), Gaps = 1/226 (0%)
Strand=Plus/Plus
Query 31180 AATTGAATCAAAC-ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCG 31238
||| |||| |||| |||||||| ||||||||||| || || || || || ||||| |||
Sbjct 1019 AATAGAATAAAACGATGCAAATATTCGTAAAGACCCTTACTGGAAAGACTATCACACTCG 1078
Query 31239 ACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCG 31298
| ||||| || ||| | | || | || ||| | ||| ||| ||||| |||
Sbjct 1079 AGGTTGAGTCGAGCGATACGATAGAGAATGTGAAAGCTAAAATTCAGGATAAGGAGGGCA 1138
Query 31299 TGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTA 31358
| || || || |||||||||||||| || || ||||||||| | || || | |||
Sbjct 1139 TCCCACCGGATCAGCAGCGTCTAATTTTTGCAGGCAAACAGCTAGAGGATGGTCGCACTC 1198
Query 31359 TGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || ||||||||||| ||||| ||||| ||||| || ||
Sbjct 1199 TGTCAGACTACAACATTCAAAAGGAATCAACTCTACATCTTGTCCT 1244
>seq150668
Length=1318
Score = 102 bits (112), Expect = 7e-17
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040
|| || || || || |||||| | ||||| || ||||||||||| || ||||||||| |
Sbjct 733 GCTTTTGCAGCTGTAGAAGGTGTTTTCTTCTCAGGCAGCTTTGCCGCGATATTTTGGCTT 792
Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100
|| || || || || ||||||||||| || || ||||| ||| | ||| || || |||
Sbjct 793 AAAAAGCGTGGTCTTATGCCCGGCCTCACCTTCAGCAATGAGCTTATAAGTCGAGATGAG 852
Query 58101 GGTCTCCATACTGATTTTGCGTGCCT 58126
|| || ||| ||||| || |||||
Sbjct 853 GGACTGCATTGCGATTTCGCTTGCCT 878
>seq270304
Length=645
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || || || | || || ||||| || ||| | || ||||||||| |
Sbjct 304 ATGCAAATTTTTGTTAAAACATTAACCGGAAAAACTATAACCCTAGAAGTTGAACCGACA 245
Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
| | |||||||| || || || || ||| || |||||||| | || | || ||
Sbjct 244 AATACTGTCGAAAATGTGAAGGCAAAG-ATACAAGATAAGGAAGGTATTCCCTCAGATCA 186
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| | || || |||||||| || ||| | ||||| | || | || |||||
Sbjct 185 GCAAAGGCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTTCTGACTATAA 126
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
|| ||||| ||||| ||||||||||| || |||
Sbjct 125 TATACAAAAGGAATCTACTCTTCATCTAGTTCTT 92
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444003405032160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |