Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq75644 159 3e-34 seq110960 156 4e-33 seq93010 129 5e-25 seq157544 120 3e-22 seq150668 102 7e-17 seq270304 91.5 1e-13 >seq75644 Length=2520 Score = 159 bits (176), Expect = 3e-34 Identities = 595/928 (64%), Gaps = 51/928 (5%) Strand=Plus/Minus Query 57528 AATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAA 57587 || || ||| | ||||| || || || || ||||||| || || ||| | | |||||| Sbjct 1499 AACCCTCGTCGGTTTGTGATATTGCCAATCCAATATCCGGATATCTGGCAATTTTACAAA 1440 Query 57588 AAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCT-GAGCGA 57646 ||||| | || || || ||| | || ||||| || || |||| || || | | || | Sbjct 1439 AAGGCTGTTGCTTCATTCTGGTCAGTTGAAGAGGTTGATTTGTCCAAAGACATTGTGCAA 1380 Query 57647 TTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGC 57706 | ||||| | || || | ||| || ||||||| |||| | || || ||||| Sbjct 1379 T-GGGATGCACTTAAGCCAGGAGAGCGACATTTTATATCGTACGTTCTCGCTTTCTTCGC 1321 Query 57707 CGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGT 57766 || ||||| ||||| || ||| |||| ||| | ||| |||||||| ||||| Sbjct 1320 TGCCAGTGATGGAATTGTGCTGGAAAATCTGGTGGAACGGTTTAGTCAAGAAGTTCAAGT 1261 Query 57767 GACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAAT 57826 | |||| ||||||||||||| | || |||| || ||||| | || || || || Sbjct 1260 ACCCGAGGTCCGATGCTTTTACGGCATGCAGATGGCAATAGAAAATATTCACTCGGAGAT 1201 Query 57827 GTATTCGCTACTCATCGATACGTA----CGTGA-----AGGACAACGACG---------- 57867 ||||| || || || ||||| || || || ||| || | | Sbjct 1200 GTATTGTCTTCTGATTGATACATATATCCGAGATCCAGTGGAAAAGTATGTATTTTTAAA 1141 Query 57868 ----AGAAACGTAGA------CTGTTCAACGCGATCGAAACAATGCCCGCGATCG----- 57912 || | |||| |||| || || ||| |||| || |||| | Sbjct 1140 TCTAAGTTTCTTAGAGATTTCTTGTTTAATGCCATC---ACAA--ACCTCGATTGTGTAC 1086 Query 57913 CCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGA 57972 ||| ||||| ||||| | | | ||||| | | | | ||||| |||||| Sbjct 1085 ACAAAAAGGCGCAGTGGGCCCTTGACTGGATTGGTGATACAAAGTCAACGTTTGCCGAGC 1026 Query 57973 GGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATAT 58032 | | || || || || ||||||| | |||||||| ||||| |||||| | |||| Sbjct 1025 GTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTTTGCGTCTATAT 966 Query 58033 TTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC 58092 ||||| | ||||| || ||||||||||| ||| |||| || ||||| || | || | Sbjct 965 TTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAGCAATGAACTTATTAGTC 906 Query 58093 GCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC 58152 ||||||| || || || || || ||||| ||||| ||| | || || || || || | Sbjct 905 GCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAAACATATCGTGAAAAAGC 846 Query 58153 CGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTG 58212 | ||| || | | | || ||| ||||| | | ||| ||||| | || Sbjct 845 CCGATAAGGAACGTGTTTATGCTATATTCAAGGAGGCATTGGAGATAGAAAAGGCTTTCT 786 Query 58213 TCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACA 58272 | | || ||| |||| || || | || |||||| |||| |||||| ||| Sbjct 785 TTAATGAGGCCTTACCCGTAAAACTGATTGGCATGAACTGTGATATGATGTGCCGTTACC 726 Query 58273 TTGAGTTTGTTGCCGACAGACTTTTGCT---CGAACT--GATTGGAGAGCGTCATTACAA 58327 | || ||||||||||| | ||||| ||| || | | |||| | || || Sbjct 725 TCGAATTTGTTGCCGA---TCGCTTGCTATACGAGCTTGGTTACGAGAAGAT--TTGGAA 671 Query 58328 CACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTT 58387 | | ||||| |||||||||||| | |||||| |||||||||| |||||||| || Sbjct 670 TGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGAGGGCAAAACAAACTTCTT 611 Query 58388 CGaaaaaaaaGTTAGCGAATATCAAAAA 58415 || || ||| | ||||| |||||| Sbjct 610 TGAGAAGCGTGTTGGGGAATACCAAAAA 583 >seq110960 Length=1818 Score = 156 bits (172), Expect = 4e-33 Identities = 593/926 (64%), Gaps = 46/926 (5%) Strand=Plus/Plus Query 57528 AATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAA 57587 || || ||| | || || || || || || ||||||| || || ||| | | |||||| Sbjct 319 AACCCTCGTCGGTTCGTGATATTGCCAATCCAATATCCGGATATCTGGCAATTTTACAAA 378 Query 57588 AAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCT-GAGCGA 57646 ||||| | || || || ||| | || ||||| || || |||| || || | | || | Sbjct 379 AAGGCTGTCGCTTCATTCTGGTCAGTTGAAGAGGTTGATTTGTCCAAAGACATTGTGCAA 438 Query 57647 TTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGC 57706 | ||||| | || || | ||| || ||||||| |||| | || || ||||| Sbjct 439 T-GGGATGCACTTAAGCCAGGAGAGCGACATTTTATATCGTACGTTCTCGCTTTCTTCGC 497 Query 57707 CGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGT 57766 || ||||| ||||| || ||| |||| ||| | ||| |||||||| ||||| Sbjct 498 TGCCAGTGATGGAATTGTGCTGGAAAATCTGGTGGAACGGTTTAGTCAAGAAGTTCAAGT 557 Query 57767 GACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAAT 57826 | |||| ||||||||||||| | || |||| || ||||| | ||||| || || Sbjct 558 ACCCGAGGTCCGATGCTTTTACGGCATGCAGATGGCAATAGAAAATATTCATTCGGAGAT 617 Query 57827 GTATTCGCTACTCATCGATACGTA----CGTGA-----AGGACAACGACG-----AGAAA 57872 ||||| || || || |||||||| || || ||| || | | ||| Sbjct 618 GTATTGTCTTCTGATTGATACGTATATCCGAGATCCAGTGGAAAAGTATGTATTTTTAAA 677 Query 57873 ----------CGTAGA------CTGTTCAACGCGATCGAAACAATGCCCGCGATCG---- 57912 | |||| |||| || || ||| || | || |||| | Sbjct 678 TCTAAGTTTTCTTAGAGATTTCTTGTTTAATGCCATC---ACGA--ACCTCGATTGTGTA 732 Query 57913 -CCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAG 57971 ||| ||||| ||||| | | | ||||| | | | | ||||| |||||| Sbjct 733 CACAAAAAGGCGCAGTGGGCCCTTGACTGGATTGGTGATACAAAGTCAACGTTTGCCGAG 792 Query 57972 AGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATA 58031 | | || || || || ||||||| | |||||||| ||||| |||||| | ||| Sbjct 793 CGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTTTGCGTCTATA 852 Query 58032 TTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCG 58091 |||||| | ||||| || ||||||||||| ||| |||| || ||||| || | || Sbjct 853 TTTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAGCAATGAACTTATTAGT 912 Query 58092 CGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAA 58151 |||||||| || || || || || ||||| ||||| ||| | || || || || || Sbjct 913 CGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAAACATATCGTGAAAAAG 972 Query 58152 CCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTT 58211 || ||| || | | | || ||| ||||| | | ||| ||||| | || Sbjct 973 CCCGATAAGGAACGTGTTTATGCTATATTCAAGGAGGCATTGGAGATAGAAAAGGCTTTC 1032 Query 58212 GTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTAC 58271 | | || ||| |||| || || | || |||||| |||| |||||| ||| Sbjct 1033 TTTAATGAGGCCTTACCCGTCAAACTGATTGGCATGAACTGTGATATGATGTGCCGCTAC 1092 Query 58272 ATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACA 58329 | || ||||||||||| | | || ||| || | | |||| | || || Sbjct 1093 CTCGAATTTGTTGCCGATCGCTTGCTGTACGAGCTTGGTTACGAGAAGAT--TTGGAATG 1150 Query 58330 CGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCG 58389 | | ||||| |||||||||||| | |||||| |||||||||| || ||||| || | Sbjct 1151 CTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGAGGGCAAAACGAACTTCTTTG 1210 Query 58390 aaaaaaaaGTTAGCGAATATCAAAAA 58415 | || ||| | ||||| |||||| Sbjct 1211 AGAAGCGTGTTGGGGAATACCAAAAA 1236 >seq93010 Length=2134 Score = 129 bits (142), Expect = 5e-25 Identities = 407/625 (65%), Gaps = 22/625 (4%) Strand=Plus/Minus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 ||||| || | |||||| ||||| || ||||| || || || || || || | || || Sbjct 749 TCAACACGGCGCATAAACAGATCGGGGATCCAAAGGGCATAAAAAAGATCCCTAGCACGA 690 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 ||||| ||| || |||||||| || || | ||| | | ||||| |||||| Sbjct 689 ACCTCTTCTGCACCAGTGTTCTTGCGTAATTCTACGAAGGAGAGAATGTCCGTATGCCAT 630 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGG 23521 |||||||| || | |||||| || || || ||| | || || |||||||||||||| || Sbjct 629 GGCTCGAGATAGATGGCAAAGGCACCAGGCCTCCTGTTACCACCCTGATCGACGTAGCGA 570 Query 23522 GCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCC--GCCTACGC 23579 || || ||||| | || | || ||| ||||| || || ||||| || | || | Sbjct 569 GCAGTATTGTTAAAAACACGTAACATTGGCACAAGTCCATTGGAGTAACCATTCGTA--C 512 Query 23580 CCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCG 23639 | || | | | ||| | | || | | ||||| | | ||| || || || | Sbjct 511 CAGCAATATAGGTACCAGTGCCGCGTATGCAATGAACATTTACACCAATACCCCCAGCAC 452 Query 23640 ATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTT 23699 ||| || || | || ||||| || || || || |||||||| |||||||| || | Sbjct 451 TTTTAGAAATAAGGGCACATTGCCGGAGTGTATCATAAATGCCCTCAATGCTGTCATCCT 392 Query 23700 TGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTG 23759 | | | ||| | ||||| ||||| || | | || ||| | | || || | Sbjct 391 TCATTGTGACAAGAAAACAGCTGGACATCTGGGGCCTTGGTGTACCAGAATTAAAGAGAG 332 Query 23760 TCGGGCTGGCGTGCGTAAAGTATCCA-TTC---GACATTAGATTGTACGTGTCGATGGCG 23815 | ||| ||||| ||||| ||| ||| ||||| | ||||| || || | | Sbjct 331 TGGGGGAAGCGTGAGTAAA----CCACTTCAAGGACATCAAGTTGTAGGTTTCACAGACT 276 Query 23816 GCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTC-- 23873 || || ||||| || ||| ||||| || | ||| | ||||| ||| | ||||| | Sbjct 275 GCCTCTATGTCATCAAAGTGAATACCAATTGAGACTCTCATCAGCATATGCTGAGGACGT 216 Query 23874 TCTCGACCGTGACGCCGTTA---ATTTTGAACAGATATGAACGTTGCATCGTTTTAAATC 23930 || || | | | ||| ||||| | |||||||| | | || || ||||| | Sbjct 215 TCATGAACTTTA-----TTATCGATTTTAAGAAGATATGAGTGCTCCAATGTCTTAAAGC 161 Query 23931 CAAAATAGTCATAGTTAAAGTCACG 23955 |||| || | ||||| || ||||| Sbjct 160 CAAAGTAATTGTAGTTGAAATCACG 136 >seq157544 Length=1252 Score = 120 bits (132), Expect = 3e-22 Identities = 163/226 (72%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 31180 AATTGAATCAAAC-ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCG 31238 ||| |||| |||| |||||||| ||||||||||| || || || || || ||||| ||| Sbjct 1019 AATAGAATAAAACGATGCAAATATTCGTAAAGACCCTTACTGGAAAGACTATCACACTCG 1078 Query 31239 ACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCG 31298 | ||||| || ||| | | || | || ||| | ||| ||| ||||| ||| Sbjct 1079 AGGTTGAGTCGAGCGATACGATAGAGAATGTGAAAGCTAAAATTCAGGATAAGGAGGGCA 1138 Query 31299 TGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTA 31358 | || || || |||||||||||||| || || ||||||||| | || || | ||| Sbjct 1139 TCCCACCGGATCAGCAGCGTCTAATTTTTGCAGGCAAACAGCTAGAGGATGGTCGCACTC 1198 Query 31359 TGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||||||||| ||||| ||||| ||||| || || Sbjct 1199 TGTCAGACTACAACATTCAAAAGGAATCAACTCTACATCTTGTCCT 1244 >seq150668 Length=1318 Score = 102 bits (112), Expect = 7e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || || || || || |||||| | ||||| || ||||||||||| || ||||||||| | Sbjct 733 GCTTTTGCAGCTGTAGAAGGTGTTTTCTTCTCAGGCAGCTTTGCCGCGATATTTTGGCTT 792 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 || || || || || ||||||||||| || || ||||| ||| | ||| || || ||| Sbjct 793 AAAAAGCGTGGTCTTATGCCCGGCCTCACCTTCAGCAATGAGCTTATAAGTCGAGATGAG 852 Query 58101 GGTCTCCATACTGATTTTGCGTGCCT 58126 || || ||| ||||| || ||||| Sbjct 853 GGACTGCATTGCGATTTCGCTTGCCT 878 >seq270304 Length=645 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || | || || ||||| || ||| | || ||||||||| | Sbjct 304 ATGCAAATTTTTGTTAAAACATTAACCGGAAAAACTATAACCCTAGAAGTTGAACCGACA 245 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 | | |||||||| || || || || ||| || |||||||| | || | || || Sbjct 244 AATACTGTCGAAAATGTGAAGGCAAAG-ATACAAGATAAGGAAGGTATTCCCTCAGATCA 186 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || |||||||| || ||| | ||||| | || | || ||||| Sbjct 185 GCAAAGGCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTTCTGACTATAA 126 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || ||||| ||||| ||||||||||| || ||| Sbjct 125 TATACAAAAGGAATCTACTCTTCATCTAGTTCTT 92 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444003405032160