Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq93010 113 4e-20 seq150668 107 2e-18 seq75644 86.0 6e-12 >seq93010 Length=2134 Score = 113 bits (124), Expect = 4e-20 Identities = 317/485 (65%), Gaps = 4/485 (1%) Strand=Plus/Minus Query 38128 TGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATA 38187 |||||||| || | ||| || | | || || || || | | ||| ||||||| | Sbjct 635 TGCCATGGCTCGAGATAGATGGCAAAGGCACCAGGCCTCCTGTTACCACCCTGATCGACG 576 Query 38188 TATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTT 38247 || | | | || || ||| | | | |||||| || || | ||||| || | || || Sbjct 575 TAGCGAGCAGTATTGTTAAAAACACGTAACATTGGCACAAGTCCATTGGAGTAACCATTC 516 Query 38248 ATACCGGATATATAAGTACCCTTAGCTCGTAT--ATTACTTATCGACAATCCTATTCCAC 38305 |||| | ||||| ||||| | | ||||| | | || ||| || || || | Sbjct 515 GTACCAGCAATATAGGTACCAGTGCCGCGTATGCAATGAACATTTACA--CCAATACCCC 458 Query 38306 CTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGT 38365 | ||| ||| || || | || ||||| | |||||| | || || || || |||| Sbjct 457 CAGCACTTTTAGAAATAAGGGCACATTGCCGGAGTGTATCATAAATGCCCTCAATGCTGT 398 Query 38366 CATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAA 38425 ||||||| |||| | | |||||| || ||||| || ||| ||| || || | |||| Sbjct 397 CATCCTTCATTGTGACAAGAAAACAGCTGGACATCTGGGGCCTTGGTGTACCAGAATTAA 338 Query 38426 ATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTA 38485 | | || || || || || | ||||| || |||| | || || ||||| | Sbjct 337 AGAGAGTGGGGGAAGCGTGAGTAAACCACTTCAAGGACATCAAGTTGTAGGTTTCACAGA 278 Query 38486 CATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTC 38545 | | ||||| ||| | ||||||||| | || || ||||| |||||||| || || | Sbjct 277 CTGCCTCTATGTCATCAAAGTGAATACCAATTGAGACTCTCATCAGCATATGCTGAGGAC 218 Query 38546 TTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAA 38605 ||| | |||||||| |||||| ||||| || | || ||||| || | |||| Sbjct 217 GTTCATGAACTTTATTATCGATTTTAAGAAGATATGAGTGCTCCAATGTCTTAAAGCCAA 158 Query 38606 AATAA 38610 | ||| Sbjct 157 AGTAA 153 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 37129 GGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATAT 37188 ||| | |||| |||||| || ||||| | |||||||||| | | | |||||| || | Sbjct 1790 GGACTGACAATCTGAAATTCCCCAGAGAGGACTCTTCTTGAAAAGACATTGCTTGTCAAG 1731 Query 37189 GGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCT 37248 |||||| |||| || | || | || |||||| | || |||||||| ||||| |||||| Sbjct 1730 GGTTCAGTGGATTCGGTGTTTCCTAGTATTTGTGCCGTTGATGCAGTTGGCATAGGTGCT 1671 Query 37249 ATTAGAAGGCTATT 37262 ||||| | ||||| Sbjct 1670 ATTAGCAAACTATT 1657 >seq150668 Length=1318 Score = 107 bits (118), Expect = 2e-18 Identities = 571/903 (63%), Gaps = 52/903 (6%) Strand=Plus/Minus Query 11342 TGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCC 11401 || ||||| | ||| || ||||||||||| || || || || || ||||||| ||| Sbjct 1163 TGGTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATTTTCC 1104 Query 11402 ATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAAT 11461 ||||| ||| ||||| | || | | || | |||| | || | | | Sbjct 1103 ATAAAATCAAACGGATTTTCGGAGTTCCAAATCTTCTTGTAACCAAGTTCAGACAGAAGA 1044 Query 11462 CTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCC 11521 | ||| || || || ||||| || || |||| | | |||||||| || || ||| Sbjct 1043 CGATCAGCCACAAACTCTATGTAGCGACACATAAGAGCGCAATTCATCCCAATGAGACTG 984 Query 11522 ACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGAC 11581 || || | |||| | || | ||| || | || || || || || || ||||| || Sbjct 983 ACGGGCAAAGCATCAGTGAGAAATTCTTGCTCAATTTTTACTGCCTCCTCCATTATAGAA 924 Query 11582 GTTATAA-CTTC-CTTAGATGGTGGATGTAATAA-ATGTTTAAACATTAAACACGCAAAA 11638 || |||| ||| ||| || ||| | ||| ||||| | | || || ||| Sbjct 923 TGGATCCTCTTCTCTTCC--GGTTT-TGCAATGATATGCTTAAATAGGAGGCAAGCGAAA 867 Query 11639 TCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATC 11698 || ||||| | || || |||| |||||| || ||||| || || | |||||||| Sbjct 866 TCGCAATGCAGTCCCTCATCTCGACTTATAAGCTCATTGCTGAAGGTGAGGCCGGGCATA 807 Query 11699 AATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCC 11758 | || || ||||| | ||||||||| || ||||| || || ||||| | || || Sbjct 806 AGACCACGCTTTTTAAGCCAAAATATCGCGGCAAAGCTGCCTGAGAAGAAAACACCTTCT 747 Query 11759 ACAGCTGCAAATGCTACTACTCTTTC--TCCAT--ATACCTTGTTGCTAGATATCCATTT 11814 ||||||||||| ||| | || | ||| || | | |||| || | ||||| | Sbjct 746 ACAGCTGCAAAAGCTGCGACACGTTCAGAGAATGGAGAATTTGTATCTCCA-ATCCAGTC 688 Query 11815 TCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAA------- 11867 ||||| | || || ||| | ||||| |||| | | || || |||| Sbjct 687 GAGAGCCCATTGCGCCTTTTTTCTGACGCACTCCAAGTTGCCGATTGCATTAAGCAAAAA 628 Query 11868 ------------------ATAAATGC--ATT---TTTTCTATATTATCTCTTACATATGT 11904 ||| |||| | | ||||| | | |||||| | || || Sbjct 627 GTCCCTACACAACAAAAGATATATGCCAACTTACTTTTCAACAGAATCTCTGATGTAAGT 568 Query 11905 ATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATA 11964 ||| || | | | |||||||| ||||| ||||| || ||||| ||||| | ||||| Sbjct 567 ATCAATAAGAAGAGAGTACATTTCAGAATGTATATTCTCAATAGCGATTTGTATGCCATA 508 Query 11965 GAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAA-ATTCTCAT 12023 ||||| || | |||| ||| || || ||| | | || ||| ||| || Sbjct 507 AAAACAGCGAACTTCTGGGATCTGAACTTCTTGGCTAAACCGCT-CGATAAGATTTTCCA 449 Query 12024 TTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAG----TATTTT 12079 || || |||||||||| || |||||||| || | | || |||| | | Sbjct 448 AAACTATCCCATCACTAGCAGCGAAAAATGCAAGAACGTAAGATAGAAAGCGTCGCTCTC 389 Query 12080 TCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACG 12139 || ||| ||| |||| ||||| | || ||||| || ||||| ||||| || || Sbjct 388 CCGGCTTAAGTGAATT----CCAATGAGGAAAGTCTTTAGACAAATCAACTTCCTCTACT 333 Query 12140 GTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGG 12199 ||||| || ||||| | || ||||| | |||||| || ||| |||||| ||| ||| Sbjct 332 GTCCAGAAGGAAGCCACAGCTTTCTTATAGAATTTCCAAATGTCAGGATACTCAAT-GGG 274 Query 12200 AAA 12202 ||| Sbjct 273 AAA 271 >seq75644 Length=2520 Score = 86.0 bits (94), Expect = 6e-12 Identities = 282/436 (65%), Gaps = 2/436 (0%) Strand=Plus/Plus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 ||||| ||||| | ||| || || || || || || || || || | || |||| | Sbjct 584 TTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATTC 643 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 |||||||| ||| ||||| | |||| | | || || |||| | ||| || Sbjct 644 TCCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAACCAAGCTCGTATAGC 703 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 || | ||| || || ||||| | || | |||| | | ||| ||||| || || || Sbjct 704 AAGCGATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATCAGT 763 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC 11578 | || || | || | | || || |||||||||| | | || || ||| ||| Sbjct 764 TTTACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATATA 823 Query 11579 GACGTTATAAC-TTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAA 11637 | | | | || ||||||| || | | | |||||| |||| | || ||||| Sbjct 824 G-CATAAACACGTTCCTTATCGGGCTTTTTCACGATATGTTTGAACAGAAGGCAAGCAAA 882 Query 11638 ATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCAT 11697 || || | |||||||| | ||| || |||||||| || || || || ||||| Sbjct 883 GTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGGCAT 942 Query 11698 CAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTC 11757 || || || || || | ||||||||||| ||||| || |||||||| | ||| || Sbjct 943 CAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCCTTC 1002 Query 11758 CACAGCTGCAAATGCT 11773 | || ||||| ||| Sbjct 1003 GATTGCAGCAAAGGCT 1018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466671796129120