Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq93010 113 4e-20
seq150668 107 2e-18
seq75644 86.0 6e-12
>seq93010
Length=2134
Score = 113 bits (124), Expect = 4e-20
Identities = 317/485 (65%), Gaps = 4/485 (1%)
Strand=Plus/Minus
Query 38128 TGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATA 38187
|||||||| || | ||| || | | || || || || | | ||| ||||||| |
Sbjct 635 TGCCATGGCTCGAGATAGATGGCAAAGGCACCAGGCCTCCTGTTACCACCCTGATCGACG 576
Query 38188 TATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTT 38247
|| | | | || || ||| | | | |||||| || || | ||||| || | || ||
Sbjct 575 TAGCGAGCAGTATTGTTAAAAACACGTAACATTGGCACAAGTCCATTGGAGTAACCATTC 516
Query 38248 ATACCGGATATATAAGTACCCTTAGCTCGTAT--ATTACTTATCGACAATCCTATTCCAC 38305
|||| | ||||| ||||| | | ||||| | | || ||| || || || |
Sbjct 515 GTACCAGCAATATAGGTACCAGTGCCGCGTATGCAATGAACATTTACA--CCAATACCCC 458
Query 38306 CTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGT 38365
| ||| ||| || || | || ||||| | |||||| | || || || || ||||
Sbjct 457 CAGCACTTTTAGAAATAAGGGCACATTGCCGGAGTGTATCATAAATGCCCTCAATGCTGT 398
Query 38366 CATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAA 38425
||||||| |||| | | |||||| || ||||| || ||| ||| || || | ||||
Sbjct 397 CATCCTTCATTGTGACAAGAAAACAGCTGGACATCTGGGGCCTTGGTGTACCAGAATTAA 338
Query 38426 ATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTA 38485
| | || || || || || | ||||| || |||| | || || ||||| |
Sbjct 337 AGAGAGTGGGGGAAGCGTGAGTAAACCACTTCAAGGACATCAAGTTGTAGGTTTCACAGA 278
Query 38486 CATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTC 38545
| | ||||| ||| | ||||||||| | || || ||||| |||||||| || || |
Sbjct 277 CTGCCTCTATGTCATCAAAGTGAATACCAATTGAGACTCTCATCAGCATATGCTGAGGAC 218
Query 38546 TTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAA 38605
||| | |||||||| |||||| ||||| || | || ||||| || | ||||
Sbjct 217 GTTCATGAACTTTATTATCGATTTTAAGAAGATATGAGTGCTCCAATGTCTTAAAGCCAA 158
Query 38606 AATAA 38610
| |||
Sbjct 157 AGTAA 153
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 37129 GGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATAT 37188
||| | |||| |||||| || ||||| | |||||||||| | | | |||||| || |
Sbjct 1790 GGACTGACAATCTGAAATTCCCCAGAGAGGACTCTTCTTGAAAAGACATTGCTTGTCAAG 1731
Query 37189 GGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCT 37248
|||||| |||| || | || | || |||||| | || |||||||| ||||| ||||||
Sbjct 1730 GGTTCAGTGGATTCGGTGTTTCCTAGTATTTGTGCCGTTGATGCAGTTGGCATAGGTGCT 1671
Query 37249 ATTAGAAGGCTATT 37262
||||| | |||||
Sbjct 1670 ATTAGCAAACTATT 1657
>seq150668
Length=1318
Score = 107 bits (118), Expect = 2e-18
Identities = 571/903 (63%), Gaps = 52/903 (6%)
Strand=Plus/Minus
Query 11342 TGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCC 11401
|| ||||| | ||| || ||||||||||| || || || || || ||||||| |||
Sbjct 1163 TGGTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATTTTCC 1104
Query 11402 ATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAAT 11461
||||| ||| ||||| | || | | || | |||| | || | | |
Sbjct 1103 ATAAAATCAAACGGATTTTCGGAGTTCCAAATCTTCTTGTAACCAAGTTCAGACAGAAGA 1044
Query 11462 CTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCC 11521
| ||| || || || ||||| || || |||| | | |||||||| || || |||
Sbjct 1043 CGATCAGCCACAAACTCTATGTAGCGACACATAAGAGCGCAATTCATCCCAATGAGACTG 984
Query 11522 ACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGAC 11581
|| || | |||| | || | ||| || | || || || || || || ||||| ||
Sbjct 983 ACGGGCAAAGCATCAGTGAGAAATTCTTGCTCAATTTTTACTGCCTCCTCCATTATAGAA 924
Query 11582 GTTATAA-CTTC-CTTAGATGGTGGATGTAATAA-ATGTTTAAACATTAAACACGCAAAA 11638
|| |||| ||| ||| || ||| | ||| ||||| | | || || |||
Sbjct 923 TGGATCCTCTTCTCTTCC--GGTTT-TGCAATGATATGCTTAAATAGGAGGCAAGCGAAA 867
Query 11639 TCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATC 11698
|| ||||| | || || |||| |||||| || ||||| || || | ||||||||
Sbjct 866 TCGCAATGCAGTCCCTCATCTCGACTTATAAGCTCATTGCTGAAGGTGAGGCCGGGCATA 807
Query 11699 AATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCC 11758
| || || ||||| | ||||||||| || ||||| || || ||||| | || ||
Sbjct 806 AGACCACGCTTTTTAAGCCAAAATATCGCGGCAAAGCTGCCTGAGAAGAAAACACCTTCT 747
Query 11759 ACAGCTGCAAATGCTACTACTCTTTC--TCCAT--ATACCTTGTTGCTAGATATCCATTT 11814
||||||||||| ||| | || | ||| || | | |||| || | ||||| |
Sbjct 746 ACAGCTGCAAAAGCTGCGACACGTTCAGAGAATGGAGAATTTGTATCTCCA-ATCCAGTC 688
Query 11815 TCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAA------- 11867
||||| | || || ||| | ||||| |||| | | || || ||||
Sbjct 687 GAGAGCCCATTGCGCCTTTTTTCTGACGCACTCCAAGTTGCCGATTGCATTAAGCAAAAA 628
Query 11868 ------------------ATAAATGC--ATT---TTTTCTATATTATCTCTTACATATGT 11904
||| |||| | | ||||| | | |||||| | || ||
Sbjct 627 GTCCCTACACAACAAAAGATATATGCCAACTTACTTTTCAACAGAATCTCTGATGTAAGT 568
Query 11905 ATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATA 11964
||| || | | | |||||||| ||||| ||||| || ||||| ||||| | |||||
Sbjct 567 ATCAATAAGAAGAGAGTACATTTCAGAATGTATATTCTCAATAGCGATTTGTATGCCATA 508
Query 11965 GAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAA-ATTCTCAT 12023
||||| || | |||| ||| || || ||| | | || ||| ||| ||
Sbjct 507 AAAACAGCGAACTTCTGGGATCTGAACTTCTTGGCTAAACCGCT-CGATAAGATTTTCCA 449
Query 12024 TTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAG----TATTTT 12079
|| || |||||||||| || |||||||| || | | || |||| | |
Sbjct 448 AAACTATCCCATCACTAGCAGCGAAAAATGCAAGAACGTAAGATAGAAAGCGTCGCTCTC 389
Query 12080 TCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACG 12139
|| ||| ||| |||| ||||| | || ||||| || ||||| ||||| || ||
Sbjct 388 CCGGCTTAAGTGAATT----CCAATGAGGAAAGTCTTTAGACAAATCAACTTCCTCTACT 333
Query 12140 GTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGG 12199
||||| || ||||| | || ||||| | |||||| || ||| |||||| ||| |||
Sbjct 332 GTCCAGAAGGAAGCCACAGCTTTCTTATAGAATTTCCAAATGTCAGGATACTCAAT-GGG 274
Query 12200 AAA 12202
|||
Sbjct 273 AAA 271
>seq75644
Length=2520
Score = 86.0 bits (94), Expect = 6e-12
Identities = 282/436 (65%), Gaps = 2/436 (0%)
Strand=Plus/Plus
Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398
||||| ||||| | ||| || || || || || || || || || | || |||| |
Sbjct 584 TTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATTC 643
Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458
|||||||| ||| ||||| | |||| | | || || |||| | ||| ||
Sbjct 644 TCCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAACCAAGCTCGTATAGC 703
Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518
|| | ||| || || ||||| | || | |||| | | ||| ||||| || || ||
Sbjct 704 AAGCGATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATCAGT 763
Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC 11578
| || || | || | | || || |||||||||| | | || || ||| |||
Sbjct 764 TTTACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATATA 823
Query 11579 GACGTTATAAC-TTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAA 11637
| | | | || ||||||| || | | | |||||| |||| | || |||||
Sbjct 824 G-CATAAACACGTTCCTTATCGGGCTTTTTCACGATATGTTTGAACAGAAGGCAAGCAAA 882
Query 11638 ATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCAT 11697
|| || | |||||||| | ||| || |||||||| || || || || |||||
Sbjct 883 GTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGGCAT 942
Query 11698 CAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTC 11757
|| || || || || | ||||||||||| ||||| || |||||||| | ||| ||
Sbjct 943 CAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCCTTC 1002
Query 11758 CACAGCTGCAAATGCT 11773
| || ||||| |||
Sbjct 1003 GATTGCAGCAAAGGCT 1018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 466671796129120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |