Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq75644 132 3e-26 seq110960 127 1e-24 >seq75644 Length=2520 Score = 132 bits (146), Expect = 3e-26 Identities = 288/431 (67%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| || | ||||| ||| | ||||| || |||||| | ||||| ||||| Sbjct 1017 GCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTTTGCGTCTATATTTTGGCTT 958 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||| ||| || |||||||| ||| | || ||| || | ||||| || |||||| Sbjct 957 AAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAGCAATGAACTTATTAGTCGCGACGAA 898 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTGTCAG 22929 || || ||| ||||||||||| | ||||| | || || | || || || | || Sbjct 897 GGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAAACATATCGTGAAAAAGCCCGATAAG 838 Query 22930 GACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCTTTCTTCCAAGAG 22989 || || || || | || || | || || || | ||||||||| | ||| Sbjct 837 GAACGTGTTTATGCTATATTCAAGGAGGCATTGGAGATAGAAAAGGCTTTCTTTAATGAG 778 Query 22990 GCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTGTACATACAGTTT 23049 || || | || |||| ||||| |||| | ||| | | ||| | | ||| Sbjct 777 GCCTTACCCGTAAAACTGATTGGCATGAACTGTGATATGATGTGCCGTTACCTCGAATTT 718 Query 23050 GTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGTTGCCAATCCA 23109 ||||| |||||| |||| | | || ||||| | ||||| | || | || ||||| Sbjct 717 GTTGCCGATCGCTTGCTATACGAGCTTGGTTACGAGAAGATTTGGAATGCTGAGAATCCC 658 Query 23110 TTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTTGAACGCCGTGTG 23169 |||||||| ||||| || || || || || ||||||||||||||||| ||||| Sbjct 657 TTTGATTTTATGGAGAATATCTCGATCGAGGGCAAAACAAACTTCTTTGAGAAGCGTGTT 598 Query 23170 AGTGAATATCA 23180 | ||||| || Sbjct 597 GGGGAATACCA 587 >seq110960 Length=1818 Score = 127 bits (140), Expect = 1e-24 Identities = 289/432 (67%), Gaps = 2/432 (0%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| || | ||||| ||| | ||||| || |||||| | ||||| ||||| Sbjct 802 GCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTTTGCGTCTATATTTTGGCTT 861 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||| ||| || |||||||| ||| | || ||| || | ||||| || |||||| Sbjct 862 AAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAGCAATGAACTTATTAGTCGCGACGAA 921 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTGTCAG 22929 || || ||| ||||||||||| | ||||| | || || | || || || | || Sbjct 922 GGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAAACATATCGTGAAAAAGCCCGATAAG 981 Query 22930 GACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCTTTCTTCCAAGAG 22989 || || || || | || || | || || || | ||||||||| | ||| Sbjct 982 GAACGTGTTTATGCTATATTCAAGGAGGCATTGGAGATAGAAAAGGCTTTCTTTAATGAG 1041 Query 22990 GCACTA-AAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTGTACATACAGTT 23048 || || | || || |||| ||||| |||| | ||| | | ||| | | || Sbjct 1042 GCCTTACCCGTCA-AACTGATTGGCATGAACTGTGATATGATGTGCCGCTACCTCGAATT 1100 Query 23049 TGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGTTGCCAATCC 23108 |||||| |||||| |||| | | || ||||| | ||||| | || | || ||||| Sbjct 1101 TGTTGCCGATCGCTTGCTGTACGAGCTTGGTTACGAGAAGATTTGGAATGCTGAGAATCC 1160 Query 23109 ATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTTGAACGCCGTGT 23168 |||||||| ||||| || || || || || ||||| ||||||||||| ||||| Sbjct 1161 CTTTGATTTTATGGAGAATATCTCGATCGAGGGCAAAACGAACTTCTTTGAGAAGCGTGT 1220 Query 23169 GAGTGAATATCA 23180 | ||||| || Sbjct 1221 TGGGGAATACCA 1232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354859927392394