Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq75644 140 3e-28
seq110960 131 2e-25
seq171037 98.7 1e-15
seq32333 98.7 1e-15
seq157544 84.2 2e-11
>seq75644
Length=2520
Score = 140 bits (154), Expect = 3e-28
Identities = 350/517 (68%), Gaps = 15/517 (3%)
Strand=Plus/Minus
Query 52555 TGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCA-CTTT 52613
||||| | |||||||| | ||||| | | ||||| | | |||||| || | ||
Sbjct 1092 TGTGTACACAAAAAGGCGCAGTGGGCCCTTGACTGGATTGGTGAT-ACAAAGTCAACGTT 1034
Query 52614 TGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGC 52673
|||||| ||| | | || |||||| | | ||||| || || ||||| || ||||||||
Sbjct 1033 TGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTTTGC 974
Query 52674 GGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGT 52732
| | ||||||| | || || | ||| | | ||||| ||| | || || ||||| ||
Sbjct 973 GTCTATATTTTGGCTTAAGAAGCGTGGCC-TGATGCCAGGCTTGACCTTCAGCAATGAAC 915
Query 52733 TGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGT-TTGTATTATAATACGCGC 52791
| || ||||||||||| | ||||| || ||||| || || | || || | |
Sbjct 914 TTATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAAACATAT-C 856
Query 52792 GTTAAAGAAAAATTGTCATATGAAAAAATTCTAGAC-ATGTTTAAAGAGGCCGTCGACAT 52850
|| |||||| ||| | || | || | || || || ||||| | || ||
Sbjct 855 GT----GAAAAAGCCCGATAAGGAACGTGTTTATGCTATATTCAAGGAGGCATTGGAGAT 800
Query 52851 TGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAAC-GCGACCA 52909
||||| | || |||| || || ||||||||| | || | ||||||||| | || |
Sbjct 799 AGAAAAGGCTTTCTTTAATGAGGCCTTACCCGTAAAACTGATTGGCATGAACTGTGAT-A 741
Query 52910 TGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGC-AGCTCGGTCAGCCG 52968
|||||||| ||| |||| |||||||| || | || | || | |||| ||| | |
Sbjct 740 TGATGTGCCGTTACCTCGAATTTGTTGCCGATCGCTTGCT-ATACGAGCTTGGTTACGAG 682
Query 52969 AAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAAA 53028
|| | ||||| || |||||| |||||| | || || ||| |||||||||||
Sbjct 681 AAGATTTGGAATGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGAGGGCAAA 622
Query 53029 ACAAACTTTTTCGAGAGACGTGTGGGCGAGTACAAAA 53065
|||||||| || |||| ||||| || || ||| |||
Sbjct 621 ACAAACTTCTTTGAGAAGCGTGTTGGGGAATACCAAA 585
>seq110960
Length=1818
Score = 131 bits (144), Expect = 2e-25
Identities = 346/516 (67%), Gaps = 13/516 (3%)
Strand=Plus/Plus
Query 52555 TGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCA-CTTT 52613
||||| | |||||||| | ||||| | | ||||| | | |||||| || | ||
Sbjct 727 TGTGTACACAAAAAGGCGCAGTGGGCCCTTGACTGGATTGGTGAT-ACAAAGTCAACGTT 785
Query 52614 TGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGC 52673
|||||| ||| | | || |||||| | | ||||| || || ||||| || ||||||||
Sbjct 786 TGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTTTGC 845
Query 52674 GGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGT 52732
| | ||||||| | || || | ||| | | ||||| ||| | || || ||||| ||
Sbjct 846 GTCTATATTTTGGCTTAAGAAGCGTGGCC-TGATGCCAGGCTTGACCTTCAGCAATGAAC 904
Query 52733 TGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGT-TTGTATTATAATACGCGC 52791
| || ||||||||||| | ||||| || ||||| || || | || || | |
Sbjct 905 TTATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAAACATAT-C 963
Query 52792 GTTAAAGAAAAATTGTCATATGAAAAAATTCTAGAC-ATGTTTAAAGAGGCCGTCGACAT 52850
|| |||||| ||| | || | || | || || || ||||| | || ||
Sbjct 964 GT----GAAAAAGCCCGATAAGGAACGTGTTTATGCTATATTCAAGGAGGCATTGGAGAT 1019
Query 52851 TGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAAC-GCGACCA 52909
||||| | || |||| || || |||||||| | || | ||||||||| | || |
Sbjct 1020 AGAAAAGGCTTTCTTTAATGAGGCCTTACCCGTCAAACTGATTGGCATGAACTGTGAT-A 1078
Query 52910 TGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGTCAGCCGA 52969
|||||||| ||| |||| |||||||| || | || || |||| ||| | ||
Sbjct 1079 TGATGTGCCGCTACCTCGAATTTGTTGCCGATCGCTTGCTGTACGAGCTTGGTTACGAGA 1138
Query 52970 AATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAAAA 53029
| | ||||| || |||||| |||||| | || || ||| ||||||||||||
Sbjct 1139 AGATTTGGAATGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGAGGGCAAAA 1198
Query 53030 CAAACTTTTTCGAGAGACGTGTGGGCGAGTACAAAA 53065
| ||||| || |||| ||||| || || ||| |||
Sbjct 1199 CGAACTTCTTTGAGAAGCGTGTTGGGGAATACCAAA 1234
>seq171037
Length=1136
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
||||| ||||| ||||| ||||||||| | ||| | |||||| || ||||| ||
Sbjct 985 GTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCG 926
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| | || | |||||||| || || || || |||||||| || |||||| |||
Sbjct 925 GCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTG 866
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | |||||||||||| | | || || || | || | |||||||| |||| |||
Sbjct 865 ATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTT 806
Query 139748 TTTACGAATATTTGCAT 139764
|| || || || |||||
Sbjct 805 TTAACAAAAATCTGCAT 789
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| || |||||||| ||||| || ||||| | || || |||||||| |||
Sbjct 763 TGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCATCTTCGAGTTGT 704
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
|| |||||| | || || | ||| ||||| || || || ||||| ||||| ||| | ||
Sbjct 703 TTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTCT-TGAATCTT 645
Query 139682 TGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
| |||| | || | |||||| | | ||||| |||| || | ||||| || ||
Sbjct 644 CGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAATTGTCTTTCCAGT 585
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
|| ||||| || |||||||||||
Sbjct 584 CAGTGTTTTGACAAATATTTGCAT 561
>seq32333
Length=4216
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
||||| ||||| ||||| ||||||||| | ||| | |||||| || ||||| ||
Sbjct 3791 GTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCG 3850
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| | || | |||||||| || || || || |||||||| || |||||| |||
Sbjct 3851 GCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTG 3910
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | |||||||||||| | | || || || | || | |||||||| |||| |||
Sbjct 3911 ATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTT 3970
Query 139748 TTTACGAATATTTGCAT 139764
|| || || || |||||
Sbjct 3971 TTAACAAAAATCTGCAT 3987
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| || |||||||| ||||| || ||||| | || || |||||||| |||
Sbjct 4013 TGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCATCTTCGAGTTGT 4072
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
|| |||||| | || || | ||| ||||| || || || ||||| ||||| ||| | ||
Sbjct 4073 TTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTCT-TGAATCTT 4131
Query 139682 TGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
| |||| | || | |||||| | | ||||| |||| || | ||||| || ||
Sbjct 4132 CGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAATTGTCTTTCCAGT 4191
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
|| ||||| || |||||||||||
Sbjct 4192 CAGTGTTTTGACAAATATTTGCAT 4215
>seq157544
Length=1252
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| || || ||||||||||| || || || |||| || || |||||||| ||
Sbjct 1229 GTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCCTCTAGCTGTTTGCCT 1170
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| | || ||||| |||||||| || || ||||| || || || ||| |||| | |||
Sbjct 1169 GCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCC-TGAATTTTAGCTTT 1111
Query 139688 AGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | || | || ||| | | ||| ||||| | || | ||||| || || | ||
Sbjct 1110 CACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGATAGTCTTTCCAGTAAGGGT 1051
Query 139747 TTTTACGAATATTTGCAT 139764
|||||||||||||||||
Sbjct 1050 CTTTACGAATATTTGCAT 1033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494102079281600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |