Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq75644 140 3e-28 seq110960 131 2e-25 seq171037 98.7 1e-15 seq32333 98.7 1e-15 seq157544 84.2 2e-11 >seq75644 Length=2520 Score = 140 bits (154), Expect = 3e-28 Identities = 350/517 (68%), Gaps = 15/517 (3%) Strand=Plus/Minus Query 52555 TGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCA-CTTT 52613 ||||| | |||||||| | ||||| | | ||||| | | |||||| || | || Sbjct 1092 TGTGTACACAAAAAGGCGCAGTGGGCCCTTGACTGGATTGGTGAT-ACAAAGTCAACGTT 1034 Query 52614 TGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGC 52673 |||||| ||| | | || |||||| | | ||||| || || ||||| || |||||||| Sbjct 1033 TGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTTTGC 974 Query 52674 GGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGT 52732 | | ||||||| | || || | ||| | | ||||| ||| | || || ||||| || Sbjct 973 GTCTATATTTTGGCTTAAGAAGCGTGGCC-TGATGCCAGGCTTGACCTTCAGCAATGAAC 915 Query 52733 TGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGT-TTGTATTATAATACGCGC 52791 | || ||||||||||| | ||||| || ||||| || || | || || | | Sbjct 914 TTATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAAACATAT-C 856 Query 52792 GTTAAAGAAAAATTGTCATATGAAAAAATTCTAGAC-ATGTTTAAAGAGGCCGTCGACAT 52850 || |||||| ||| | || | || | || || || ||||| | || || Sbjct 855 GT----GAAAAAGCCCGATAAGGAACGTGTTTATGCTATATTCAAGGAGGCATTGGAGAT 800 Query 52851 TGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAAC-GCGACCA 52909 ||||| | || |||| || || ||||||||| | || | ||||||||| | || | Sbjct 799 AGAAAAGGCTTTCTTTAATGAGGCCTTACCCGTAAAACTGATTGGCATGAACTGTGAT-A 741 Query 52910 TGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGC-AGCTCGGTCAGCCG 52968 |||||||| ||| |||| |||||||| || | || | || | |||| ||| | | Sbjct 740 TGATGTGCCGTTACCTCGAATTTGTTGCCGATCGCTTGCT-ATACGAGCTTGGTTACGAG 682 Query 52969 AAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAAA 53028 || | ||||| || |||||| |||||| | || || ||| ||||||||||| Sbjct 681 AAGATTTGGAATGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGAGGGCAAA 622 Query 53029 ACAAACTTTTTCGAGAGACGTGTGGGCGAGTACAAAA 53065 |||||||| || |||| ||||| || || ||| ||| Sbjct 621 ACAAACTTCTTTGAGAAGCGTGTTGGGGAATACCAAA 585 >seq110960 Length=1818 Score = 131 bits (144), Expect = 2e-25 Identities = 346/516 (67%), Gaps = 13/516 (3%) Strand=Plus/Plus Query 52555 TGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCA-CTTT 52613 ||||| | |||||||| | ||||| | | ||||| | | |||||| || | || Sbjct 727 TGTGTACACAAAAAGGCGCAGTGGGCCCTTGACTGGATTGGTGAT-ACAAAGTCAACGTT 785 Query 52614 TGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGC 52673 |||||| ||| | | || |||||| | | ||||| || || ||||| || |||||||| Sbjct 786 TGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTTTGC 845 Query 52674 GGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGT 52732 | | ||||||| | || || | ||| | | ||||| ||| | || || ||||| || Sbjct 846 GTCTATATTTTGGCTTAAGAAGCGTGGCC-TGATGCCAGGCTTGACCTTCAGCAATGAAC 904 Query 52733 TGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGT-TTGTATTATAATACGCGC 52791 | || ||||||||||| | ||||| || ||||| || || | || || | | Sbjct 905 TTATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAAACATAT-C 963 Query 52792 GTTAAAGAAAAATTGTCATATGAAAAAATTCTAGAC-ATGTTTAAAGAGGCCGTCGACAT 52850 || |||||| ||| | || | || | || || || ||||| | || || Sbjct 964 GT----GAAAAAGCCCGATAAGGAACGTGTTTATGCTATATTCAAGGAGGCATTGGAGAT 1019 Query 52851 TGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAAC-GCGACCA 52909 ||||| | || |||| || || |||||||| | || | ||||||||| | || | Sbjct 1020 AGAAAAGGCTTTCTTTAATGAGGCCTTACCCGTCAAACTGATTGGCATGAACTGTGAT-A 1078 Query 52910 TGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGTCAGCCGA 52969 |||||||| ||| |||| |||||||| || | || || |||| ||| | || Sbjct 1079 TGATGTGCCGCTACCTCGAATTTGTTGCCGATCGCTTGCTGTACGAGCTTGGTTACGAGA 1138 Query 52970 AATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAAAA 53029 | | ||||| || |||||| |||||| | || || ||| |||||||||||| Sbjct 1139 AGATTTGGAATGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGAGGGCAAAA 1198 Query 53030 CAAACTTTTTCGAGAGACGTGTGGGCGAGTACAAAA 53065 | ||||| || |||| ||||| || || ||| ||| Sbjct 1199 CGAACTTCTTTGAGAAGCGTGTTGGGGAATACCAAA 1234 >seq171037 Length=1136 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| ||||| ||||| ||||||||| | ||| | |||||| || ||||| || Sbjct 985 GTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCG 926 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | || | |||||||| || || || || |||||||| || |||||| ||| Sbjct 925 GCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTG 866 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | |||||||||||| | | || || || | || | |||||||| |||| ||| Sbjct 865 ATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTT 806 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 805 TTAACAAAAATCTGCAT 789 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || |||||||| ||||| || ||||| | || || |||||||| ||| Sbjct 763 TGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCATCTTCGAGTTGT 704 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| | || || | ||| ||||| || || || ||||| ||||| ||| | || Sbjct 703 TTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTCT-TGAATCTT 645 Query 139682 TGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | |||| | || | |||||| | | ||||| |||| || | ||||| || || Sbjct 644 CGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAATTGTCTTTCCAGT 585 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || ||||| || ||||||||||| Sbjct 584 CAGTGTTTTGACAAATATTTGCAT 561 >seq32333 Length=4216 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| ||||| ||||| ||||||||| | ||| | |||||| || ||||| || Sbjct 3791 GTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCG 3850 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | || | |||||||| || || || || |||||||| || |||||| ||| Sbjct 3851 GCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTG 3910 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | |||||||||||| | | || || || | || | |||||||| |||| ||| Sbjct 3911 ATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTT 3970 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 3971 TTAACAAAAATCTGCAT 3987 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || |||||||| ||||| || ||||| | || || |||||||| ||| Sbjct 4013 TGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCATCTTCGAGTTGT 4072 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| | || || | ||| ||||| || || || ||||| ||||| ||| | || Sbjct 4073 TTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTCT-TGAATCTT 4131 Query 139682 TGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | |||| | || | |||||| | | ||||| |||| || | ||||| || || Sbjct 4132 CGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAATTGTCTTTCCAGT 4191 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || ||||| || ||||||||||| Sbjct 4192 CAGTGTTTTGACAAATATTTGCAT 4215 >seq157544 Length=1252 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || ||||||||||| || || || |||| || || |||||||| || Sbjct 1229 GTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCCTCTAGCTGTTTGCCT 1170 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | || ||||| |||||||| || || ||||| || || || ||| |||| | ||| Sbjct 1169 GCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCC-TGAATTTTAGCTTT 1111 Query 139688 AGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || ||| | | ||| ||||| | || | ||||| || || | || Sbjct 1110 CACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGATAGTCTTTCCAGTAAGGGT 1051 Query 139747 TTTTACGAATATTTGCAT 139764 ||||||||||||||||| Sbjct 1050 CTTTACGAATATTTGCAT 1033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494102079281600