Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq150668 161 9e-35
seq75644 136 4e-27
seq110960 125 7e-24
>seq150668
Length=1318
Score = 161 bits (178), Expect = 9e-35
Identities = 584/907 (64%), Gaps = 40/907 (4%)
Strand=Plus/Minus
Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643
|| ||||| | ||| | || || || || || ||||| || ||||| ||||||||||||
Sbjct 1163 TGGTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATTTTCC 1104
Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703
||||||||||| |||||| || | | | || | |||| ||||| | || |
Sbjct 1103 ATAAAATCAAACGGATTTTCGGAGTTCCAAATCTTCTTGTAACCAAGTTCAGACAGAAGA 1044
Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763
| |||||| | |||||| || || || |||| | | | |||||||| || || || |
Sbjct 1043 CGATCAGCCACAAACTCTATGTAGCGACACATAAGAGCGCAATTCATCCCAATGAGACTG 984
Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATA--A 13821
|| || | || || | |||||||| || || || ||||| | || ||| |
Sbjct 983 ACGGGCAAAGCATCAGTGAGAAATTCTTGCTCAATTTTTACTGCCTCCTCCATTATAGAA 924
Query 13822 TTG-TAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAA 13880
| | | | |||| | | | | | | ||| ||||| | | || || |||
Sbjct 923 TGGATCCTCTTCTCTTCCGGTTTTGCAA---TGATATGCTTAAATAGGAGGCAAGCGAAA 867
Query 13881 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13940
|| ||||| || |||||||||| ||| ||||| || || || || | || |||||
Sbjct 866 TCGCAATGCAGTCCCTCATCTCGACTTATAAGCTCATTGCTGAAGGTGAGGCCGGGCATA 807
Query 13941 AATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCA 14000
| || || ||||| | ||||||||| || ||||| || || ||||| | || ||
Sbjct 806 AGACCACGCTTTTTAAGCCAAAATATCGCGGCAAAGCTGCCTGAGAAGAAAACACCTTCT 747
Query 14001 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATATCCATTT 14059
|| || ||||| ||| | ||||| || | | ||| | | || | ||||| |
Sbjct 746 ACAGCTGCAAAAGCTGCGACACGTTCAGAGAATGGAGAATTTGTATCTCCA-ATCCAGTC 688
Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119
|||||||| | |||||| | | | |||| | | || ||||||| ||| |
Sbjct 687 GAGAGCCCATTGCGCCTTTTTTCTGACGCACTCCAAGTTGCCGATTGCATTAAGCAAAAA 628
Query 14120 TTCCTT-CTC---------TTTAG-------TACTT-------GAA------ATGTATGT 14149
||| | | | | || ||||| ||| ||||| ||
Sbjct 627 GTCCCTACACAACAAAAGATATATGCCAACTTACTTTTCAACAGAATCTCTGATGTAAGT 568
Query 14150 ATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCAT 14208
||||||||| ||| | ||||||||||| ||||| || || ||||| || || | ||||
Sbjct 567 ATCAATAAG-AAGAGAGTACATTTCAGAATGTATATTCTCAATAGCGATTTGTATGCCAT 509
Query 14209 AAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCAT 14268
|||| || | | |||| | || ||||| | ||| | ||| | ||||||
Sbjct 508 AAAAACAGCGAACTTCTGGGATCTGAACTTCTTGGCTAAACCGCTCGATAAGATTTTCCA 449
Query 14269 TAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTT 14328
|||||| ||||||||||| || |||||||| | | || | |||| | |||||
Sbjct 448 AAACTATCCCATCACTAGCAGCGAAAAATGCAAGAACGTAAGATAGAAAGCGTCGCTCTC 389
Query 14329 CATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCC 14388
| || ||| ||||||| | || || ||||| | ||| ||||| || |||||||
Sbjct 388 CCGGCTTAAGTGAATTCCAATGAGGAAAGTCTTTAGACAAATCAACTTCCTCTACTGTCC 329
Query 14389 AAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAA 14448
| || ||| |||||||| ||||| | | ||| || || ||| || ||||| |
Sbjct 328 AGAAGGAAGCCACAGCTTTCTTATAGAATTTCCAAATGTCAGGATACTCAATGGGAAACA 269
Query 14449 CTACAAA 14455
||||||
Sbjct 268 TTACAAA 262
>seq75644
Length=2520
Score = 136 bits (150), Expect = 4e-27
Identities = 553/868 (64%), Gaps = 39/868 (4%)
Strand=Plus/Plus
Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639
|||||| ||||| | ||| | || ||||||||||| ||||| || || | || |||||
Sbjct 583 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATT 642
Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAG 13699
|||||||||||||| ||||| | | | | || || |||| || || ||||
Sbjct 643 CTCCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAACCAAGCTCGTATAG 702
Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759
|| | ||| |||| ||| || | || | |||| | |||||| ||||| || || ||
Sbjct 703 CAAGCGATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATCAG 762
Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819
|||||| || | | | || || | |||||||| || ||||| || | ||
Sbjct 763 TTTTACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATAT 822
Query 13820 AATTGTAATAATCTCATTAGAAGGAGGATATTT---TAGATGTTTAAAAATTAAACACGC 13876
| || | || || | || | ||| | |||||| || | | || ||
Sbjct 823 AGCATAAACACGTTCCTT---ATCGGGCTTTTTCACGATATGTTTGAACAGAAGGCAAGC 879
Query 13877 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13936
||| || |||||||| || || | |||||||||||| || || || || |||||
Sbjct 880 AAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGG 939
Query 13937 CATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCC 13996
||||| || || || || | ||||||||| | ||||| ||||||||||| | |||
Sbjct 940 CATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCC 999
Query 13997 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCA 14056
|| | ||||||||| ||| | || || |||||| || ||| | | |||||
Sbjct 1000 TTCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCACCAATCCA 1059
Query 14057 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116
| ||||| | | ||||| | | | |||| | || || |||||||| ||
Sbjct 1060 GTCAAGGGCCCACTGCGCCTTTTTGTGTACACAATCGAGGTTTGTGATGGCATTAAACAA 1119
Query 14117 ATATTC---------CTTCTCTTTA-------GTACTT--------GA-----AATGTAT 14147
| || ||| |||| ||||| || || |||
Sbjct 1120 GAAATCTCTAAGAAACTTAGATTTAAAAATACATACTTTTCCACTGGATCTCGGATATAT 1179
Query 14148 GTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCA 14207
|||||||| || | | |||||| || ||||| || ||||| || || ||||| | ||
Sbjct 1180 GTATCAATCAGAAGACAATACATCTCCGAGTGAATATTTTCTATTGCCATCTGCATGCCG 1239
Query 14208 TAAAAGCATCTAGCTTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTC 14266
|||||||||| | || | ||| ||||| || | ||| | ||| ||| ||||||
Sbjct 1240 TAAAAGCATCGGACCTCGGGTACTTGAACTTCTTGACT-AAACCGTTCCACCAGATTTTC 1298
Query 14267 ATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTC 14326
|| || |||||||| || || || || || | | || ||||| | | ||||
Sbjct 1299 CAGCACAATTCCATCACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAATGTCGCTC 1358
Query 14327 TTCATTGTTGAGTTTTTTCCAATCGGATAA-ATCCTTAGAAAGATCTACTTCATCAACTG 14385
|| | | | | | ||| || | | || || || || | ||| || || |||||||
Sbjct 1359 -TCCTGGCTTAAGTGCATCCCATTGCACAATGTCTTTGGACAAATCAACCTCTTCAACTG 1417
Query 14386 TCCAAAAACTAGCGACAGCTTTTTTATA 14413
||| || ||| ||||| ||||| ||
Sbjct 1418 ACCAGAATGAAGCAACAGCCTTTTTGTA 1445
>seq110960
Length=1818
Score = 125 bits (138), Expect = 7e-24
Identities = 292/439 (67%), Gaps = 6/439 (1%)
Strand=Plus/Minus
Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639
|||||| ||||| | ||| | || ||||||||||| ||||| || || | || |||||
Sbjct 1236 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGATATT 1177
Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAG 13699
|||||||||||||| ||||| | | | | || || |||| || || | ||
Sbjct 1176 CTCCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAACCAAGCTCGTACAG 1117
Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759
|| | ||| |||| ||| || | || | |||| | |||||| ||||| || || ||
Sbjct 1116 CAAGCGATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAATCAG 1057
Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819
||| || || | | | || || | |||||||| || ||||| || | ||
Sbjct 1056 TTTGACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATAT 997
Query 13820 AATTGTAATAATCTCATTAGAAGGAGGATATTTTAG---ATGTTTAAAAATTAAACACGC 13876
| || | || ||| || | ||| | |||||| || | | || ||
Sbjct 996 AGCATAAACACGTTCCTTATCGGGC---TTTTTCACGATATGTTTGAACAGAAGGCAAGC 940
Query 13877 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13936
||| || |||||||| || || | |||||||||||| || || || || |||||
Sbjct 939 AAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGG 880
Query 13937 CATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCC 13996
||||| || || || || | ||||||||| | ||||| ||||||||||| | |||
Sbjct 879 CATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCC 820
Query 13997 CTCAACTGCAGCAAACGCT 14015
|| | ||||||||| |||
Sbjct 819 TTCGATTGCAGCAAAGGCT 801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 477830687753200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |