Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq150668 161 9e-35 seq75644 136 4e-27 seq110960 125 7e-24 >seq150668 Length=1318 Score = 161 bits (178), Expect = 9e-35 Identities = 584/907 (64%), Gaps = 40/907 (4%) Strand=Plus/Minus Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 || ||||| | ||| | || || || || || ||||| || ||||| |||||||||||| Sbjct 1163 TGGTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATTTTCC 1104 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 ||||||||||| |||||| || | | | || | |||| ||||| | || | Sbjct 1103 ATAAAATCAAACGGATTTTCGGAGTTCCAAATCTTCTTGTAACCAAGTTCAGACAGAAGA 1044 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763 | |||||| | |||||| || || || |||| | | | |||||||| || || || | Sbjct 1043 CGATCAGCCACAAACTCTATGTAGCGACACATAAGAGCGCAATTCATCCCAATGAGACTG 984 Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATA--A 13821 || || | || || | |||||||| || || || ||||| | || ||| | Sbjct 983 ACGGGCAAAGCATCAGTGAGAAATTCTTGCTCAATTTTTACTGCCTCCTCCATTATAGAA 924 Query 13822 TTG-TAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAA 13880 | | | | |||| | | | | | | ||| ||||| | | || || ||| Sbjct 923 TGGATCCTCTTCTCTTCCGGTTTTGCAA---TGATATGCTTAAATAGGAGGCAAGCGAAA 867 Query 13881 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13940 || ||||| || |||||||||| ||| ||||| || || || || | || ||||| Sbjct 866 TCGCAATGCAGTCCCTCATCTCGACTTATAAGCTCATTGCTGAAGGTGAGGCCGGGCATA 807 Query 13941 AATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCA 14000 | || || ||||| | ||||||||| || ||||| || || ||||| | || || Sbjct 806 AGACCACGCTTTTTAAGCCAAAATATCGCGGCAAAGCTGCCTGAGAAGAAAACACCTTCT 747 Query 14001 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATATCCATTT 14059 || || ||||| ||| | ||||| || | | ||| | | || | ||||| | Sbjct 746 ACAGCTGCAAAAGCTGCGACACGTTCAGAGAATGGAGAATTTGTATCTCCA-ATCCAGTC 688 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119 |||||||| | |||||| | | | |||| | | || ||||||| ||| | Sbjct 687 GAGAGCCCATTGCGCCTTTTTTCTGACGCACTCCAAGTTGCCGATTGCATTAAGCAAAAA 628 Query 14120 TTCCTT-CTC---------TTTAG-------TACTT-------GAA------ATGTATGT 14149 ||| | | | | || ||||| ||| ||||| || Sbjct 627 GTCCCTACACAACAAAAGATATATGCCAACTTACTTTTCAACAGAATCTCTGATGTAAGT 568 Query 14150 ATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCAT 14208 ||||||||| ||| | ||||||||||| ||||| || || ||||| || || | |||| Sbjct 567 ATCAATAAG-AAGAGAGTACATTTCAGAATGTATATTCTCAATAGCGATTTGTATGCCAT 509 Query 14209 AAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCAT 14268 |||| || | | |||| | || ||||| | ||| | ||| | |||||| Sbjct 508 AAAAACAGCGAACTTCTGGGATCTGAACTTCTTGGCTAAACCGCTCGATAAGATTTTCCA 449 Query 14269 TAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTT 14328 |||||| ||||||||||| || |||||||| | | || | |||| | ||||| Sbjct 448 AAACTATCCCATCACTAGCAGCGAAAAATGCAAGAACGTAAGATAGAAAGCGTCGCTCTC 389 Query 14329 CATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCC 14388 | || ||| ||||||| | || || ||||| | ||| ||||| || ||||||| Sbjct 388 CCGGCTTAAGTGAATTCCAATGAGGAAAGTCTTTAGACAAATCAACTTCCTCTACTGTCC 329 Query 14389 AAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAA 14448 | || ||| |||||||| ||||| | | ||| || || ||| || ||||| | Sbjct 328 AGAAGGAAGCCACAGCTTTCTTATAGAATTTCCAAATGTCAGGATACTCAATGGGAAACA 269 Query 14449 CTACAAA 14455 |||||| Sbjct 268 TTACAAA 262 >seq75644 Length=2520 Score = 136 bits (150), Expect = 4e-27 Identities = 553/868 (64%), Gaps = 39/868 (4%) Strand=Plus/Plus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 |||||| ||||| | ||| | || ||||||||||| ||||| || || | || ||||| Sbjct 583 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATT 642 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAG 13699 |||||||||||||| ||||| | | | | || || |||| || || |||| Sbjct 643 CTCCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAACCAAGCTCGTATAG 702 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 || | ||| |||| ||| || | || | |||| | |||||| ||||| || || || Sbjct 703 CAAGCGATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATCAG 762 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 |||||| || | | | || || | |||||||| || ||||| || | || Sbjct 763 TTTTACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATAT 822 Query 13820 AATTGTAATAATCTCATTAGAAGGAGGATATTT---TAGATGTTTAAAAATTAAACACGC 13876 | || | || || | || | ||| | |||||| || | | || || Sbjct 823 AGCATAAACACGTTCCTT---ATCGGGCTTTTTCACGATATGTTTGAACAGAAGGCAAGC 879 Query 13877 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13936 ||| || |||||||| || || | |||||||||||| || || || || ||||| Sbjct 880 AAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGG 939 Query 13937 CATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCC 13996 ||||| || || || || | ||||||||| | ||||| ||||||||||| | ||| Sbjct 940 CATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCC 999 Query 13997 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCA 14056 || | ||||||||| ||| | || || |||||| || ||| | | ||||| Sbjct 1000 TTCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCACCAATCCA 1059 Query 14057 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 | ||||| | | ||||| | | | |||| | || || |||||||| || Sbjct 1060 GTCAAGGGCCCACTGCGCCTTTTTGTGTACACAATCGAGGTTTGTGATGGCATTAAACAA 1119 Query 14117 ATATTC---------CTTCTCTTTA-------GTACTT--------GA-----AATGTAT 14147 | || ||| |||| ||||| || || ||| Sbjct 1120 GAAATCTCTAAGAAACTTAGATTTAAAAATACATACTTTTCCACTGGATCTCGGATATAT 1179 Query 14148 GTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCA 14207 |||||||| || | | |||||| || ||||| || ||||| || || ||||| | || Sbjct 1180 GTATCAATCAGAAGACAATACATCTCCGAGTGAATATTTTCTATTGCCATCTGCATGCCG 1239 Query 14208 TAAAAGCATCTAGCTTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTC 14266 |||||||||| | || | ||| ||||| || | ||| | ||| ||| |||||| Sbjct 1240 TAAAAGCATCGGACCTCGGGTACTTGAACTTCTTGACT-AAACCGTTCCACCAGATTTTC 1298 Query 14267 ATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTC 14326 || || |||||||| || || || || || | | || ||||| | | |||| Sbjct 1299 CAGCACAATTCCATCACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAATGTCGCTC 1358 Query 14327 TTCATTGTTGAGTTTTTTCCAATCGGATAA-ATCCTTAGAAAGATCTACTTCATCAACTG 14385 || | | | | | ||| || | | || || || || | ||| || || ||||||| Sbjct 1359 -TCCTGGCTTAAGTGCATCCCATTGCACAATGTCTTTGGACAAATCAACCTCTTCAACTG 1417 Query 14386 TCCAAAAACTAGCGACAGCTTTTTTATA 14413 ||| || ||| ||||| ||||| || Sbjct 1418 ACCAGAATGAAGCAACAGCCTTTTTGTA 1445 >seq110960 Length=1818 Score = 125 bits (138), Expect = 7e-24 Identities = 292/439 (67%), Gaps = 6/439 (1%) Strand=Plus/Minus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 |||||| ||||| | ||| | || ||||||||||| ||||| || || | || ||||| Sbjct 1236 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGATATT 1177 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAG 13699 |||||||||||||| ||||| | | | | || || |||| || || | || Sbjct 1176 CTCCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAACCAAGCTCGTACAG 1117 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 || | ||| |||| ||| || | || | |||| | |||||| ||||| || || || Sbjct 1116 CAAGCGATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAATCAG 1057 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 ||| || || | | | || || | |||||||| || ||||| || | || Sbjct 1056 TTTGACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATAT 997 Query 13820 AATTGTAATAATCTCATTAGAAGGAGGATATTTTAG---ATGTTTAAAAATTAAACACGC 13876 | || | || ||| || | ||| | |||||| || | | || || Sbjct 996 AGCATAAACACGTTCCTTATCGGGC---TTTTTCACGATATGTTTGAACAGAAGGCAAGC 940 Query 13877 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13936 ||| || |||||||| || || | |||||||||||| || || || || ||||| Sbjct 939 AAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGG 880 Query 13937 CATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCC 13996 ||||| || || || || | ||||||||| | ||||| ||||||||||| | ||| Sbjct 879 CATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCC 820 Query 13997 CTCAACTGCAGCAAACGCT 14015 || | ||||||||| ||| Sbjct 819 TTCGATTGCAGCAAAGGCT 801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477830687753200