Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq150668 152 5e-32 seq75644 125 7e-24 seq110960 116 4e-21 >seq150668 Length=1318 Score = 152 bits (168), Expect = 5e-32 Identities = 581/908 (64%), Gaps = 42/908 (5%) Strand=Plus/Minus Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 || ||||| | ||| | || || ||||| || ||||| || ||||| |||||||||||| Sbjct 1163 TGGTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATTTTCC 1104 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 |||||||| || |||||| || | | | || | |||| ||||| | | | Sbjct 1103 ATAAAATCAAACGGATTTTCGGAGTTCCAAATCTTCTTGTAACCAAGTTCAGACAGAAGA 1044 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13551 | |||||| | |||||| || || || |||| | | | |||||||| || || || | Sbjct 1043 CGATCAGCCACAAACTCTATGTAGCGACACATAAGAGCGCAATTCATCCCAATGAGACTG 984 Query 13552 ACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 13611 || || | || ||| | |||||||| || || || ||||| | || ||| Sbjct 983 ACGGGCAAAGCATCAGTGAGAAATTCTTGCTCAATTTTTACTGCCTCCTCCATTATAGAA 924 Query 13612 TTAATAATGTCATTAGAAGGAGGATATT----TTAGATGTTTAAAAATTAAACACGCAAA 13667 | || | | | || | || | | ||| ||||| | | || || || Sbjct 923 TGGATCCTCTTCTCTTCCGG----TTTTGCAATGATATGCTTAAATAGGAGGCAAGCGAA 868 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 ||| ||||| || |||||||||| ||| ||||| || || || || | || ||||| Sbjct 867 ATCGCAATGCAGTCCCTCATCTCGACTTATAAGCTCATTGCTGAAGGTGAGGCCGGGCAT 808 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 | || || ||||| | ||||||||| || || || || || ||||| | || || Sbjct 807 AAGACCACGCTTTTTAAGCCAAAATATCGCGGCAAAGCTGCCTGAGAAGAAAACACCTTC 748 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTT 13847 || || ||||| ||| | ||||| || | | ||| | | | ||||| | Sbjct 747 TACAGCTGCAAAAGCTGCGACACGTTCAGAGAATGGAGAATTTGTATCTCCAATCCAGTC 688 Query 13848 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAAT- 13906 |||||||| | |||||| | | | |||| | |||||||||| | ||| Sbjct 687 GAGAGCCCATTGCGCCTTTTTTCTGACGCACTCCAAGTTGCCGATTGCATTAAGCAAAAA 628 Query 13907 GTTCCTTCTC---------TTTAG-------TACTT-------GAA------ATGTATGT 13937 || ||| | | | || ||||| ||| ||||| || Sbjct 627 GTCCCTACACAACAAAAGATATATGCCAACTTACTTTTCAACAGAATCTCTGATGTAAGT 568 Query 13938 ATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCAT 13996 ||||||||| ||| | ||||||||||| ||||| || || ||||| || || | |||| Sbjct 567 ATCAATAAG-AAGAGAGTACATTTCAGAATGTATATTCTCAATAGCGATTTGTATGCCAT 509 Query 13997 AAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAG-TTTTCA 14055 ||||||| | | |||||| || || || | ||| | || | ||| ||||| Sbjct 508 AAAAACAGCGAACTTCTGGGATCTGAACTTCTTGGCTAAACCGCTC-GATAAGATTTTCC 450 Query 14056 TTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCT 14115 ||| || ||||||||||| || |||||||| | | || | |||| | ||||| Sbjct 449 AAAACTATCCCATCACTAGCAGCGAAAAATGCAAGAACGTAAGATAGAAAGCGTCGCTCT 390 Query 14116 TCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTC 14175 | || ||| ||||||| | || || ||||| | ||| ||||| || |||||| Sbjct 389 CCCGGCTTAAGTGAATTCCAATGAGGAAAGTCTTTAGACAAATCAACTTCCTCTACTGTC 330 Query 14176 CAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAA 14235 || || ||| |||||||| ||||| | | ||| || || ||| || ||||| Sbjct 329 CAGAAGGAAGCCACAGCTTTCTTATAGAATTTCCAAATGTCAGGATACTCAATGGGAAAC 270 Query 14236 ACTACAAA 14243 | |||||| Sbjct 269 ATTACAAA 262 >seq75644 Length=2520 Score = 125 bits (138), Expect = 7e-24 Identities = 292/439 (67%), Gaps = 6/439 (1%) Strand=Plus/Plus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 |||||| ||||| | ||| | || ||||| ||||| ||||| || || | || ||||| Sbjct 583 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATT 642 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAA 13487 ||||||||||| || ||||| | | | | || || |||| || || ||| Sbjct 643 CTCCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAACCAAGCTCGTATAG 702 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 || | ||| |||| ||| || | || | |||| | |||||| ||||| || || || Sbjct 703 CAAGCGATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATCAG 762 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 |||||| || | | | | || || | |||||||| || ||||| || | || Sbjct 763 TTTTACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATAT 822 Query 13608 AATCTTAATAATGTCATTAGAAGGAGGATATTTTAG---ATGTTTAAAAATTAAACACGC 13664 | | || | || ||| || | ||| | |||||| || | | || || Sbjct 823 AGCATAAACACGTTCCTTATCGGGC---TTTTTCACGATATGTTTGAACAGAAGGCAAGC 879 Query 13665 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13724 ||| || |||||||| || || | |||||||||||| || || || || ||||| Sbjct 880 AAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGG 939 Query 13725 CATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCC 13784 ||||| || || || || | ||||||||| | || || ||||||||||| | ||| Sbjct 940 CATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCC 999 Query 13785 CTCAACTGCAGCAAACGCT 13803 || | ||||||||| ||| Sbjct 1000 TTCGATTGCAGCAAAGGCT 1018 >seq110960 Length=1818 Score = 116 bits (128), Expect = 4e-21 Identities = 290/439 (66%), Gaps = 6/439 (1%) Strand=Plus/Minus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 |||||| ||||| | ||| | || ||||| ||||| ||||| || || | || ||||| Sbjct 1236 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGATATT 1177 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAA 13487 ||||||||||| || ||||| | | | | || || |||| || || | | Sbjct 1176 CTCCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAACCAAGCTCGTACAG 1117 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 || | ||| |||| ||| || | || | |||| | |||||| ||||| || || || Sbjct 1116 CAAGCGATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAATCAG 1057 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 ||| || || | | | | || || | |||||||| || ||||| || | || Sbjct 1056 TTTGACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATAT 997 Query 13608 AATCTTAATAATGTCATTAGAAGGAGGATATTTTAG---ATGTTTAAAAATTAAACACGC 13664 | | || | || ||| || | ||| | |||||| || | | || || Sbjct 996 AGCATAAACACGTTCCTTATCGGGC---TTTTTCACGATATGTTTGAACAGAAGGCAAGC 940 Query 13665 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13724 ||| || |||||||| || || | |||||||||||| || || || || ||||| Sbjct 939 AAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGG 880 Query 13725 CATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCC 13784 ||||| || || || || | ||||||||| | || || ||||||||||| | ||| Sbjct 879 CATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCC 820 Query 13785 CTCAACTGCAGCAAACGCT 13803 || | ||||||||| ||| Sbjct 819 TTCGATTGCAGCAAAGGCT 801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476695993260720