Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq110960 129 6e-25 seq75644 129 6e-25 seq171037 105 7e-18 seq32333 105 7e-18 >seq110960 Length=1818 Score = 129 bits (142), Expect = 6e-25 Identities = 309/462 (67%), Gaps = 13/462 (3%) Strand=Plus/Plus Query 50404 ACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGC 50463 || || ||||| ||| | | || ||||| | | ||||| || || |||||||| || Sbjct 781 ACGTTTGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGT 840 Query 50464 TTTGCAGCCATATTTTACATTAA-AACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAA 50522 ||||| | ||||||| |||| || | | ||| | ||||| ||| | || || ||||| Sbjct 841 TTTGCGTCTATATTTTGGCTTAAGAAGCGT-GGCCTGATGCCAGGCTTGACCTTCAGCAA 899 Query 50523 CGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTG---TTTGTACTACAA 50579 || | ||| ||||||||||| | ||||| |||||||| || | ||| | | | Sbjct 900 TGAACTTATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAAACA 959 Query 50580 TACGCGCGTAAATGAAAAATTATCATACGAAACAATTTTGGAC-ATGTTCAAAGAAGCCG 50638 || ||| |||||| ||| | ||| ||| | || ||||| || || Sbjct 960 TAT---CGT----GAAAAAGCCCGATAAGGAACGTGTTTATGCTATATTCAAGGAGGCAT 1012 Query 50639 TCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACG 50698 | || || ||||| | || || | || || |||||||| | || | ||||||||| Sbjct 1013 TGGAGATAGAAAAGGCTTTCTTTAATGAGGCCTTACCCGTCAAACTGATTGGCATGAACT 1072 Query 50699 CAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAGCTGGGAC 50758 || ||||||||| ||| | || |||||||| || | ||| ||| |||| || Sbjct 1073 GTGATATGATGTGCCGCTACCTCGAATTTGTTGCCGATCGCTTGCTGTACGAGCTTGGTT 1132 Query 50759 AACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATATCGTTGGAGG 50818 | ||| | ||||| || |||||| |||||| | || || ||| | |||| Sbjct 1133 ACGAGAAGATTTGGAATGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGAGG 1192 Query 50819 GCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATACAAAA 50860 ||||||| ||||| || || | ||||| || |||||| ||| Sbjct 1193 GCAAAACGAACTTCTTTGAGAAGCGTGTTGGGGAATACCAAA 1234 >seq75644 Length=2520 Score = 129 bits (142), Expect = 6e-25 Identities = 309/462 (67%), Gaps = 13/462 (3%) Strand=Plus/Minus Query 50404 ACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGC 50463 || || ||||| ||| | | || ||||| | | ||||| || || |||||||| || Sbjct 1038 ACGTTTGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGT 979 Query 50464 TTTGCAGCCATATTTTACATTAA-AACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAA 50522 ||||| | ||||||| |||| || | | ||| | ||||| ||| | || || ||||| Sbjct 978 TTTGCGTCTATATTTTGGCTTAAGAAGCGT-GGCCTGATGCCAGGCTTGACCTTCAGCAA 920 Query 50523 CGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTG---TTTGTACTACAA 50579 || | ||| ||||||||||| | ||||| |||||||| || | ||| | | | Sbjct 919 TGAACTTATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAAACA 860 Query 50580 TACGCGCGTAAATGAAAAATTATCATACGAAACAATTTTGGAC-ATGTTCAAAGAAGCCG 50638 || ||| |||||| ||| | ||| ||| | || ||||| || || Sbjct 859 TAT---CGT----GAAAAAGCCCGATAAGGAACGTGTTTATGCTATATTCAAGGAGGCAT 807 Query 50639 TCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACG 50698 | || || ||||| | || || | || || |||||||| | || | ||||||||| Sbjct 806 TGGAGATAGAAAAGGCTTTCTTTAATGAGGCCTTACCCGTAAAACTGATTGGCATGAACT 747 Query 50699 CAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAGCTGGGAC 50758 || ||||||||| ||| | || |||||||| || | ||| | | |||| || Sbjct 746 GTGATATGATGTGCCGTTACCTCGAATTTGTTGCCGATCGCTTGCTATACGAGCTTGGTT 687 Query 50759 AACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATATCGTTGGAGG 50818 | ||| | ||||| || |||||| |||||| | || || ||| | |||| Sbjct 686 ACGAGAAGATTTGGAATGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGAGG 627 Query 50819 GCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATACAAAA 50860 ||||||||||||| || || | ||||| || |||||| ||| Sbjct 626 GCAAAACAAACTTCTTTGAGAAGCGTGTTGGGGAATACCAAA 585 >seq171037 Length=1136 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || | ||||| || || ||||| || || |||||||| Sbjct 788 GCCACCACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGA 729 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || || |||||||||||||| |||||| | || || | ||| ||||| || || Sbjct 728 TAGGGTCCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGG 669 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| || |||| | || | ||||| | | ||| || Sbjct 668 AATACCTTCCTTGTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCAC 609 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| ||| | ||||| || |||| |||||| || ||||||||||| Sbjct 608 TTCAAGAGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCAT 561 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||||||||| || || || |||||| | ||| | |||||| |||||||| || Sbjct 985 GTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCG 926 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | || | |||||||| || || || || |||||||| || ||||| ||| Sbjct 925 GCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTG 866 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | |||||| ||||| | | ||| ||||| | ||| | |||||||| |||| ||| Sbjct 865 ATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTT 806 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 805 TTAACAAAAATCTGCAT 789 >seq32333 Length=4216 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || | ||||| || || ||||| || || |||||||| Sbjct 3988 GCCACCACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGA 4047 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || || |||||||||||||| |||||| | || || | ||| ||||| || || Sbjct 4048 TAGGGTCCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGG 4107 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| || |||| | || | ||||| | | ||| || Sbjct 4108 AATACCTTCCTTGTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCAC 4167 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| ||| | ||||| || |||| |||||| || ||||||||||| Sbjct 4168 TTCAAGAGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCAT 4215 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||||||||| || || || |||||| | ||| | |||||| |||||||| || Sbjct 3791 GTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCG 3850 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | || | |||||||| || || || || |||||||| || ||||| ||| Sbjct 3851 GCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTG 3910 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | |||||| ||||| | | ||| ||||| | ||| | |||||||| |||| ||| Sbjct 3911 ATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTT 3970 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 3971 TTAACAAAAATCTGCAT 3987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505009170723360