Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq150668 149 9e-31 seq110960 141 1e-28 seq75644 132 7e-26 >seq150668 Length=1318 Score = 149 bits (164), Expect = 9e-31 Identities = 294/428 (69%), Gaps = 19/428 (4%) Strand=Plus/Plus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || || || || ||||| || | ||||| || || || ||||| || || |||||||| Sbjct 733 GCTTTTGCAGCTGTAGAAGGTGTTTTCTTCTCAGGCAGCTTTGCCGCGATATTTTGGCTT 792 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 || ||||| || || |||||||| || || ||| || ||| ||||| |||||| ||| Sbjct 793 AAAAAGCGTGGTCTTATGCCCGGCCTCACCTTCAGCAATGAGCTTATAAGTCGAGATGAG 852 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTTTC-GCAACTATCTGCGTCCCGAGTGCAG 125611 || || || || || || || || || ||| ||| |||| | |||| Sbjct 853 GGACTGCATTGCGATTTCGCTTGCCTCCTATTTAAGCA--TATC---------ATTGCAA 901 Query 125612 ATCCAGCGATGAAAAGGT--CAT-CAACATTGTAACCGATGCCGTGAGGATAGAACAAGA 125668 | || | ||| ||| ||| | | | || | || || || | || || ||||| Sbjct 902 AACCGGAAGAGAAGAGGATCCATTCTATAATGGAG--GAGGCAGTAAAAATTGAGCAAGA 959 Query 125669 GTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGA 125728 ||||| || || | | || ||||| | ||||| ||||| ||| || ||||| Sbjct 960 ATTTCTCACTGATGCTTTGCCCGTCAGTCTCATTGGGATGAATTGCGCTCTTATGTGTCG 1019 Query 125729 GTACATAGAGTTTGTGGCAGATCGTCTACTGTACG-AGTTGATTGGCCGCAAGATTTACA 125787 ||||||||||||||||| |||||||| |||| | | ||| || | ||||||| | Sbjct 1020 CTACATAGAGTTTGTGGCTGATCGTCTTCTGTCTGAACTTGGTT-ACAAGAAGATTTGGA 1078 Query 125788 ACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTT 125847 || || | ||||| |||||||| ||| | ||||| || ||||| || ||||| |||| Sbjct 1079 ACTCCGAAAATCCGTTTGATTTTATGGAAAATATATCTCTGGAGGGCAAAACCAATTTTT 1138 Query 125848 TCGAGAAG 125855 |||||||| Sbjct 1139 TCGAGAAG 1146 >seq110960 Length=1818 Score = 141 bits (156), Expect = 1e-28 Identities = 574/888 (65%), Gaps = 66/888 (7%) Strand=Plus/Plus Query 125010 TATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAG 125069 |||| || || ||| || | |||||||||||| || || || ||| | || |||||| Sbjct 352 TATCCGGATATCTGGCAATTTTACAAAAAGGCTGTCGCTTCATTCTGGTCAGTTGAAGAG 411 Query 125070 GTCGATCTGTCCAAGGACCT-GTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGA 125128 || ||| ||||||| ||| | || | || |||| | | | | | | | |||||| | Sbjct 412 GTTGATTTGTCCAAAGACATTGTGCAAT-GGGATGCACTTAAGCCAGGA---GAGCGACA 467 Query 125129 GTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT 125188 ||||||||| || || | || ||||| || | | |||||||| || || ||||| Sbjct 468 TTTTATATCGTACGTTCTCGCTTTCTTCGCTGCCAGTGATGGAATTGTGCTGGAAAATCT 527 Query 125189 GTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCC 125247 | || ||| || |||||| ||| | | || ||||| ||||||||||| | | Sbjct 528 GGTGGAACGGTTTAGTCAAGAAGTTCAAG-TACCCGAGGTCCGATGCTTTTACGGCATGC 586 Query 125248 AAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTC 125307 | || || || || | || ||||| ||||| | | |||||||| | ||| || | Sbjct 587 AGATGGCAATAGAAAATATTCATTCGGAGATGTATTGTCTTCTGATTGATACGTATATCC 646 Query 125308 GCGATCC---GCAA---------------------------CGTAAACACATGCTCTTTA 125337 | ||||| | || | || | | | | |||| Sbjct 647 GAGATCCAGTGGAAAAGTATGTATTTTTAAATCTAAGTTTTCTTAGAGATTTCTTGTTTA 706 Query 125338 ACGCAATCGACACGGTGC-CG--TCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGA 125394 | || || |||| | || | | ||| |||||||| || |||| || |||| Sbjct 707 ATGCCAT---CACGAACCTCGATTGTGTACACAAAAAGGCGCAGTGGGCCCTTGACTGGA 763 Query 125395 TCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCA 125454 | | ||| ||||| ||| ||||| | | | || || || || | || || Sbjct 764 TTGGTGATACAAAGTCAACGTTTGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAG 823 Query 125455 TCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCG 125514 |||||||||| || ||||||||| | || |||||||| |||||||| || || ||||| | Sbjct 824 TCTTCTTTTCCGGCAGTTTTGCGTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAG 883 Query 125515 GACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCA 125574 | |||| ||| || || |||| ||| ||||| ||||| ||| |||||||| Sbjct 884 GCTTGACCTTCAGCAATGAACTTATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTT 943 Query 125575 TTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGA-AAAGGTCATC 125633 || ||||| ||| || | ||| || | | || |||| | || || | Sbjct 944 GCCTTCTGTT---CAAACATAT-CGT---GA---AAAAGCC--CGATAAGGAACGTGTTT 991 Query 125634 A--ACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTC-TAACCGAATCCCTACCG 125690 | || | | || || || ||||||| ||| |||| | | || || |||| Sbjct 992 ATGCTATATTCAAGGAGGCATTGGAGATAGAA-AAGGCTTTCTTTAATGAGGCCTTACCC 1050 Query 125691 GTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGAT 125750 |||| |||||||||||||||| | | |||||| ||| | || ||||| || ||| Sbjct 1051 GTCAAACTGATTGGCATGAACTGTGATATGATGTGCCGCTACCTCGAATTTGTTGCCGAT 1110 Query 125751 CGTCTACTGTACGAG-TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTT 125809 || | ||||||||| ||| || | ||||||| || || |||||||||||||||| Sbjct 1111 CGCTTGCTGTACGAGCTTGGTT-ACGAGAAGATTTGGAATGCTGAGAATCCCTTTGATTT 1169 Query 125810 CATGACCAGCATATCAC--TAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 ||| || ||||| | | ||||| || || ||||| || |||||| Sbjct 1170 TATG--GAGAATATCTCGATCGAGGGCAAAACGAACTTCTTTGAGAAG 1215 >seq75644 Length=2520 Score = 132 bits (146), Expect = 7e-26 Identities = 568/884 (64%), Gaps = 59/884 (7%) Strand=Plus/Minus Query 125010 TATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAG 125069 |||| || || ||| || | |||||||||||| || || || ||| | || |||||| Sbjct 1466 TATCCGGATATCTGGCAATTTTACAAAAAGGCTGTTGCTTCATTCTGGTCAGTTGAAGAG 1407 Query 125070 GTCGATCTGTCCAAGGACCT-GTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGA 125128 || ||| ||||||| ||| | || | || |||| | | | | | | | |||||| | Sbjct 1406 GTTGATTTGTCCAAAGACATTGTGCAAT-GGGATGCACTTAAGCCAGGA---GAGCGACA 1351 Query 125129 GTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT 125188 ||||||||| || || | || ||||| || | | |||||||| || || ||||| Sbjct 1350 TTTTATATCGTACGTTCTCGCTTTCTTCGCTGCCAGTGATGGAATTGTGCTGGAAAATCT 1291 Query 125189 GTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCC 125247 | || ||| || |||||| ||| | | || ||||| ||||||||||| | | Sbjct 1290 GGTGGAACGGTTTAGTCAAGAAGTTCAAG-TACCCGAGGTCCGATGCTTTTACGGCATGC 1232 Query 125248 AAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTC 125307 | || || || || | |||||||| ||||| | | |||||||| | || || | Sbjct 1231 AGATGGCAATAGAAAATATTCACTCGGAGATGTATTGTCTTCTGATTGATACATATATCC 1172 Query 125308 GCGATCC---GCAA--------------------------CGTAAACACATGCTCTTTAA 125338 | ||||| | || | || | | | | ||||| Sbjct 1171 GAGATCCAGTGGAAAAGTATGTATTTTTAAATCTAAGTTTCTTAGAGATTTCTTGTTTAA 1112 Query 125339 CGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGA 125398 || ||| | | | | ||| |||||||| || |||| || ||||| | Sbjct 1111 TGCCATCACAAACCTCGATTGTGTACACAAAAAGGCGCAGTGGGCCCTTGACTGGATTGG 1052 Query 125399 TGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTT 125458 ||| ||||| ||| ||||| | | | || || || || | || || |||| Sbjct 1051 TGATACAAAGTCAACGTTTGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTT 992 Query 125459 CTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACT 125518 |||||| || ||||||||| | || |||||||| |||||||| || || ||||| || | Sbjct 991 CTTTTCCGGCAGTTTTGCGTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTT 932 Query 125519 GACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCT 125578 ||| ||| || || |||| ||| ||||| ||||| ||| |||||||| || Sbjct 931 GACCTTCAGCAATGAACTTATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCT 872 Query 125579 ACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGA-AAAGGTCATCA--A 125635 ||||| ||| || | ||| || | | || |||| | || || | | Sbjct 871 TCTGTT---CAAACATAT-CGT---GA---AAAAGCC--CGATAAGGAACGTGTTTATGC 824 Query 125636 CATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTC-TAACCGAATCCCTACCGGTCA 125694 || | | || || || ||||||| ||| |||| | | || || |||| || | Sbjct 823 TATATTCAAGGAGGCATTGGAGATAGAA-AAGGCTTTCTTTAATGAGGCCTTACCCGTAA 765 Query 125695 GCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTC 125754 |||||||||||||||| | | |||||| ||| | || ||||| || ||||| Sbjct 764 AACTGATTGGCATGAACTGTGATATGATGTGCCGTTACCTCGAATTTGTTGCCGATCGCT 705 Query 125755 TACTGTACGAG-TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATG 125813 | || |||||| ||| || | ||||||| || || |||||||||||||||| ||| Sbjct 704 TGCTATACGAGCTTGGTT-ACGAGAAGATTTGGAATGCTGAGAATCCCTTTGATTTTATG 646 Query 125814 ACCAGCATATCAC--TAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 || ||||| | | ||||| || || ||||| || |||||| Sbjct 645 --GAGAATATCTCGATCGAGGGCAAAACAAACTTCTTTGAGAAG 604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738128329390480