Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq171037 93.3 3e-14 seq32333 93.3 3e-14 >seq171037 Length=1136 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 15132 GTCTGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAAT 15191 ||| ||| || || | ||||| || | || | || || ||||| || || || |||| Sbjct 1020 GTCAGCCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAAT 961 Query 15192 CGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGT 15251 || || | | |||||||| |||||| || || | || || ||||| ||||| Sbjct 960 CGGATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAG 901 Query 15252 TTGGAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTT 15310 |||||||||||||| || ||||| ||| || | |||| | || || || | Sbjct 900 GGGGAATTCCTTCTTTATCTTGGATTTTAGCT-TTGATGTTTTCCACTGTGTCACTTGAT 842 Query 15311 TCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| || || || ||||||||||| |||||||| ||||| Sbjct 841 TCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 789 >seq32333 Length=4216 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 15132 GTCTGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAAT 15191 ||| ||| || || | ||||| || | || | || || ||||| || || || |||| Sbjct 3756 GTCAGCCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAAT 3815 Query 15192 CGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGT 15251 || || | | |||||||| |||||| || || | || || ||||| ||||| Sbjct 3816 CGGATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAG 3875 Query 15252 TTGGAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTT 15310 |||||||||||||| || ||||| ||| || | |||| | || || || | Sbjct 3876 GGGGAATTCCTTCTTTATCTTGGATTTTAGCT-TTGATGTTTTCCACTGTGTCACTTGAT 3934 Query 15311 TCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| || || || ||||||||||| |||||||| ||||| Sbjct 3935 TCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 3987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360782600560518