Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq171037 82.4 6e-11 >seq171037 Length=1136 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||| || |||||||||||||| | | || || | || || || ||||| || Sbjct 757 GTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCATCTTCGAGTTGTTTTCCA 698 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| ||||||| || || ||||| || | || || ||||| ||| ||| ||| Sbjct 697 GCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGAATCTTCGACTTT 638 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | || || | | ||| ||| | ||||| || || || || | ||| Sbjct 637 ACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAATTGTCTTTCCAGTCAGTGTT 578 Query 19025 TTGACAAAAATTTGCATTTTAAATCTCTTATAAAT 19059 |||||||| |||||||||||| || ||| |||| Sbjct 577 TTGACAAATATTTGCATTTTAGATTGCTTTAAAAT 543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412974165566812