Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq171037 89.7 3e-13 seq32333 89.7 3e-13 >seq171037 Length=1136 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||||| ||||| || || ||||| || ||||| ||||| || || | | ||| || Sbjct 998 CACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTC 939 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276 | ||| ||||| ||| ||||| ||||||||||| | ||| || |||||||| || Sbjct 938 TAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTG 879 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | | || ||| | ||| | ||||| | | || || |||| ||| || || Sbjct 878 GATTTTAGC---TTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGT 822 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || ||||| |||||||| || ||||| |||||| Sbjct 821 CTTGCCCGTCAGAGTTTTAACAAAAATCTGCATG 788 >seq32333 Length=4216 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||||| ||||| || || ||||| || ||||| ||||| || || | | ||| || Sbjct 3778 CACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTC 3837 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276 | ||| ||||| ||| ||||| ||||||||||| | ||| || |||||||| || Sbjct 3838 TAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTG 3897 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | | || ||| | ||| | ||||| | | || || |||| ||| || || Sbjct 3898 GATTTTAGC---TTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGT 3954 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || ||||| |||||||| || ||||| |||||| Sbjct 3955 CTTGCCCGTCAGAGTTTTAACAAAAATCTGCATG 3988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317548361497404