Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq171037 104 2e-17 seq32333 104 2e-17 >seq171037 Length=1136 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 43891 TCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC 43950 ||| ||||| || | ||||| ||||| || | || ||||| |||||||||||||| Sbjct 1019 TCAGCCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATC 960 Query 43951 GTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTG 44010 | |||| ||| || || | ||||||||| ||||| || || ||||||||||| | Sbjct 959 GGATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGG 900 Query 44011 AGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTC 44070 || | |||||||||||| ||||| ||||| | | || || || | || Sbjct 899 GGGAATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTC 840 Query 44071 CACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || | |||||||| || || || | ||| || ||||| || |||||| Sbjct 839 GACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCATG 788 >seq32333 Length=4216 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 43891 TCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC 43950 ||| ||||| || | ||||| ||||| || | || ||||| |||||||||||||| Sbjct 3757 TCAGCCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATC 3816 Query 43951 GTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTG 44010 | |||| ||| || || | ||||||||| ||||| || || ||||||||||| | Sbjct 3817 GGATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGG 3876 Query 44011 AGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTC 44070 || | |||||||||||| ||||| ||||| | | || || || | || Sbjct 3877 GGGAATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTC 3936 Query 44071 CACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || | |||||||| || || || | ||| || ||||| || |||||| Sbjct 3937 GACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCATG 3988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353409541874904