Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq150668 188 6e-43
seq75644 145 7e-30
seq110960 127 2e-24
>seq150668
Length=1318
Score = 188 bits (208), Expect = 6e-43
Identities = 594/907 (65%), Gaps = 54/907 (6%)
Strand=Plus/Minus
Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922
|| ||||||| ||| | || || ||||| || ||||| || || | || |||||||||
Sbjct 1163 TGGTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATTTTCC 1104
Query 12923 ATAAAATCGAAAGGATTTTTCGAA---CAATAGTATTTT-TTACACCCTAATTCTAGTAA 12978
|||||||| || ||||||| || ||| || || || | || | ||| || |
Sbjct 1103 ATAAAATCAAACGGATTTTCGGAGTTCCAA----ATCTTCTTGTAACCAAGTTC-AGACA 1049
Query 12979 CAATCTG-TCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTA 13037
|| | ||||| |||||||||||||| | ||| | | | || ||||| || || |
Sbjct 1048 GAAGACGATCAGCCACAAACTCTATGTAGCGACACATAAGAGCGCAATTCATCCCAATGA 989
Query 13038 ATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTA 13097
| || |||| ||| || || | ||| | || || || | ||||| || | ||
Sbjct 988 GACTGACGGGCAAAGCATCAGTGAGAAATTCTTGCTCAATTTTTACTGCCTCCTCCATTA 929
Query 13098 TGTCTCTTATTACGTTCTCTAATGGAGGATTTG--AT-AGATGCTTAAACATCATACATG 13154
| || |||||| || |||| || | ||||||||| | | || |
Sbjct 928 TAGAATGGATCCTCTTCTCTTCCGGT---TTTGCAATGATATGCTTAAATAGGAGGCAAG 872
Query 13155 CAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCG 13214
| ||||| || |||| ||| ||||||| |||||| ||||| || || || || || |
Sbjct 871 CGAAATCGCAATGCAGTCCCTCATCTCGACTTATAAGCTCATTGCTGAAGGTGAGGCCGG 812
Query 13215 GCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTC 13274
||||||| || || ||||||| ||||||||| || ||||| || || || || | |
Sbjct 811 GCATAAGACCACGCTTTTTAAGCCAAAATATCGCGGCAAAGCTGCCTGAGAAGAAAACAC 752
Query 13275 CTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTA-TC 13333
|||| || |||||||| ||| | | |||| | | | |||| || |||| | ||
Sbjct 751 CTTCTACAGCTGCAAAAGCTGCGACACGTTCAGAGAATGGAGAATTTGTA-TCTCCAATC 693
Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAAT 13393
|| | ||||| | || |||| | | ||||| | || || | ||||| ||||
Sbjct 692 CAGTCGAGAGCCCATTGCGCCTTTTTTCTGACGCACTCCAAGTTGCCGATTGCATTAAGC 633
Query 13394 AAATAAt-----------------ttttttCC---TTACTGTCTAA---AATAT---AAG 13427
||| | | | | | || ||||| | || ||| | | |
Sbjct 632 AAAAAGTCCCTACACAACAAAAGATATATGCCAACTTACTTTTCAACAGAATCTCTGATG 573
Query 13428 TATCTATCAATAAGCTA----TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAA 13483
|| |||||||||| |||||||| ||||| ||||| || || || ||||| |
Sbjct 572 TAAGTATCAATAAGAAGAGAGTACATTTCAGAATGTATATTCTCAATAGCGATTTGTATG 513
Query 13484 CCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAG-TT 13542
||||||||||| | | | |||| | ||||||||| | ||| | || | |||| ||
Sbjct 512 CCATAAAAACAGCGAACTTCTGGGATCTGAACTTCTTGGCTAAACCGCTC-GATAAGATT 454
Query 13543 TTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtttttt 13602
||| ||||||||| ||||||||||| ||||| ||||| | || | ||| |
Sbjct 453 TTCCAAAACTATCCCATCACTAGCAGCGAAAAATGCAAGAACGTAAGATAGAAAGCGTCG 394
Query 13603 ttCGTTTTCTGACAACTTTAA--CCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCA 13660
|| | | | | | || ||||| ||||| ||||| || ||||| || |||||
Sbjct 393 CTC--TCCCGGCTTAAGTGAATTCCAATGAGGAAAGTCTTTAGACAAATCAACTTCCTCT 336
Query 13661 ACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATG 13720
|| ||||| || ||||| ||||| |||||||| | |||| || || ||| |||||
Sbjct 335 ACTGTCCAGAAGGAAGCCACAGCTTTCTTATAGAATTTCCAAATGTCAGGATACTCAATG 276
Query 13721 GGAAACA 13727
|||||||
Sbjct 275 GGAAACA 269
>seq75644
Length=2520
Score = 145 bits (160), Expect = 7e-30
Identities = 574/891 (64%), Gaps = 53/891 (6%)
Strand=Plus/Plus
Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918
|||||| ||||| | ||| | || ||||| ||||||||||| || || | ||| |||||
Sbjct 583 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATT 642
Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTAC--ACCCTAATTCTAGT 12976
||||||||||| || ||||| | | || | | | || | | || | || |
Sbjct 643 CTCCATAAAATCAAAGGGATTCTCAG--CATTCCAAATCTTCTCGTAACCAAGCTCGTAT 700
Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036
| ||| | || |||||||| || | ||| | ||| | |||||||||||| || ||
Sbjct 701 AGCAAGCGATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATC 760
Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096
| |||||| || | || || | || || |||||||| || | ||| || | | |
Sbjct 761 AGTTTTACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAAT 820
Query 13097 ATGTCTCTTATTACGTTCTCTAATGGAGGATTT----GATAGATGCTTAAACATCATACA 13152
|| | | | |||||| || || | | ||| |||| || || |||| | ||
Sbjct 821 ATAGCA-TAAACACGTTC-CTTATCGGGCTTTTTCACGATA--TGTTTGAACAGAAGGCA 876
Query 13153 TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACC 13212
||||| || ||| | ||||| || | ||| || || || || || || | ||
Sbjct 877 AGCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCC 936
Query 13213 CGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTAT 13272
||||| || || || || |||| ||||||||||| ||||| || ||||| || |
Sbjct 937 TGGCATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGAC 996
Query 13273 TCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTAT 13332
|||||| | ||| ||||| ||| | | || || |||| ||| || | ||
Sbjct 997 TCCTTCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCACCAAT 1056
Query 13333 CCACTTTCTGGCCCAGTTTGC-TTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAA 13391
||| | |||||| | || ||||||| || | || | | ||| || || ||||
Sbjct 1057 CCAGTCAAGGGCCCACTGCGCCTTTTTGTGTA-CACAATCGAGGTTTGTGATGGCATTAA 1115
Query 13392 ATAAATAAttt--------------ttt---------tCCTT----ACTG--TCTAAAAT 13422
| || ||| | ||| | ||| |||| ||| ||
Sbjct 1116 ACAAGAAATCTCTAAGAAACTTAGATTTAAAAATACATACTTTTCCACTGGATCTCGGAT 1175
Query 13423 ATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAA 13482
||| ||||| |||| | | |||||| || || ||||||||||| || || || || |
Sbjct 1176 ATATGTATCAATCAGAAGACAATACATCTCCGAGTGAATATTTTCTATTGCCATCTGCAT 1235
Query 13483 ACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGT 13541
|| ||||| |||| |||| | ||| |||||||| || | ||| | ||| | | |
Sbjct 1236 GCCGTAAAAGCATCGGACCTCGGGTACTTGAACTTCTTGACT-AAACCGTTCCACCAGAT 1294
Query 13542 TTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttt 13601
|||| || || || ||||| ||||| || ||||| || | || | ||||| | |
Sbjct 1295 TTTCCAGCACAATTCCATCACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAATGTC 1354
Query 13602 tttCGTTTTCTGAC--AACTTTAACCAATCTGGAAAA--TCTTTTGATAAATCTACCTCC 13657
|| | ||| | || | | || || || | || ||||| || ||||| |||||
Sbjct 1355 GCTC---TCCTGGCTTAAGTGCATCCCAT-TGCACAATGTCTTTGGACAAATCAACCTCT 1410
Query 13658 TCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCC 13708
||||| | ||| || |||||||||||||| || || | ||| ||||||
Sbjct 1411 TCAACTGACCAGAATGAAGCAACAGCCTTTTTGTAAAATTGCCAGATATCC 1461
>seq110960
Length=1818
Score = 127 bits (140), Expect = 2e-24
Identities = 573/894 (64%), Gaps = 58/894 (6%)
Strand=Plus/Minus
Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918
|||||| ||||| | ||| | || ||||| ||||| ||||| || || | ||| |||||
Sbjct 1236 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGATATT 1177
Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTAC--ACCCTAATTCTAGT 12976
||||||||||| || ||||| | | || | | | || | | || | ||
Sbjct 1176 CTCCATAAAATCAAAGGGATTCTCAG--CATTCCAAATCTTCTCGTAACCAAGCTCGTAC 1119
Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036
| ||| | || |||||||| || | ||| | ||| | |||||||||||| || ||
Sbjct 1118 AGCAAGCGATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAATC 1059
Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096
| ||| || || | || || | || || |||||||| || | ||| || | | |
Sbjct 1058 AGTTTGACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAAT 999
Query 13097 ATGTCTCTTATTACGTTCTCTAATGGAGGATTT----GATAGATGCTTAAACATCATACA 13152
|| | | | |||||| || || | | ||| |||| || || |||| | ||
Sbjct 998 ATAGCA-TAAACACGTTC-CTTATCGGGCTTTTTCACGATA--TGTTTGAACAGAAGGCA 943
Query 13153 TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACC 13212
||||| || ||| | ||||| || | ||| || || || || || || | ||
Sbjct 942 AGCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCC 883
Query 13213 CGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTAT 13272
||||| || || || || |||| ||||||||||| ||||| || ||||| || |
Sbjct 882 TGGCATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGAC 823
Query 13273 TCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTAT 13332
|||||| | ||| ||||| ||| | | || || |||| ||| || | ||
Sbjct 822 TCCTTCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCACCAAT 763
Query 13333 CCACTTTCTGGCCCAGTTTGC-TTTTTGTTTAA-----CGCAGTTCAT------------ 13374
||| | |||||| | || ||||||| || || |||| |
Sbjct 762 CCAGTCAAGGGCCCACTGCGCCTTTTTGTGTACACAATCGAGGTTCGTGATGGCATTAAA 703
Query 13375 -----ATTTTCTA-------TTGCGTTAAATAAATA-AtttttttCCTTACTG--TCTAA 13419
| | |||| || || || ||||| || |||||| |||| |||
Sbjct 702 CAAGAAATCTCTAAGAAAACTTAGATTTAA-AAATACATACTTTTCC--ACTGGATCTCG 646
Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479
||||| ||||| |||| | | |||||| || |||||||||||||| || || || ||
Sbjct 645 GATATACGTATCAATCAGAAGACAATACATCTCCGAATGAATATTTTCTATTGCCATCTG 586
Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTA 13538
| || ||||| |||| |||| | ||| |||||||| || | ||| | ||| | |
Sbjct 585 CATGCCGTAAAAGCATCGGACCTCGGGTACTTGAACTTCTTGACT-AAACCGTTCCACCA 527
Query 13539 AGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtt 13598
||||| || || || ||||| ||||| || ||||| || | || | ||||| |
Sbjct 526 GATTTTCCAGCACAATTCCATCACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAAT 467
Query 13599 ttttttCGTTTTCTGAC--AACTTTAACCAATCTGGAAAA--TCTTTTGATAAATCTACC 13654
| || | ||| | || | | || || || | || ||||| || ||||| |||
Sbjct 466 GTCGCTC---TCCTGGCTTAAGTGCATCCCAT-TGCACAATGTCTTTGGACAAATCAACC 411
Query 13655 TCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCC 13708
|| ||||| | ||| || ||||| |||||||| || || | ||| ||||||
Sbjct 410 TCTTCAACTGACCAGAATGAAGCGACAGCCTTTTTGTAAAATTGCCAGATATCC 357
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429320488497996
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