Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq150668 188 6e-43 seq75644 145 7e-30 seq110960 127 2e-24 >seq150668 Length=1318 Score = 188 bits (208), Expect = 6e-43 Identities = 594/907 (65%), Gaps = 54/907 (6%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 || ||||||| ||| | || || ||||| || ||||| || || | || ||||||||| Sbjct 1163 TGGTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATTTTCC 1104 Query 12923 ATAAAATCGAAAGGATTTTTCGAA---CAATAGTATTTT-TTACACCCTAATTCTAGTAA 12978 |||||||| || ||||||| || ||| || || || | || | ||| || | Sbjct 1103 ATAAAATCAAACGGATTTTCGGAGTTCCAA----ATCTTCTTGTAACCAAGTTC-AGACA 1049 Query 12979 CAATCTG-TCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTA 13037 || | ||||| |||||||||||||| | ||| | | | || ||||| || || | Sbjct 1048 GAAGACGATCAGCCACAAACTCTATGTAGCGACACATAAGAGCGCAATTCATCCCAATGA 989 Query 13038 ATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTA 13097 | || |||| ||| || || | ||| | || || || | ||||| || | || Sbjct 988 GACTGACGGGCAAAGCATCAGTGAGAAATTCTTGCTCAATTTTTACTGCCTCCTCCATTA 929 Query 13098 TGTCTCTTATTACGTTCTCTAATGGAGGATTTG--AT-AGATGCTTAAACATCATACATG 13154 | || |||||| || |||| || | ||||||||| | | || | Sbjct 928 TAGAATGGATCCTCTTCTCTTCCGGT---TTTGCAATGATATGCTTAAATAGGAGGCAAG 872 Query 13155 CAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCG 13214 | ||||| || |||| ||| ||||||| |||||| ||||| || || || || || | Sbjct 871 CGAAATCGCAATGCAGTCCCTCATCTCGACTTATAAGCTCATTGCTGAAGGTGAGGCCGG 812 Query 13215 GCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTC 13274 ||||||| || || ||||||| ||||||||| || ||||| || || || || | | Sbjct 811 GCATAAGACCACGCTTTTTAAGCCAAAATATCGCGGCAAAGCTGCCTGAGAAGAAAACAC 752 Query 13275 CTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTA-TC 13333 |||| || |||||||| ||| | | |||| | | | |||| || |||| | || Sbjct 751 CTTCTACAGCTGCAAAAGCTGCGACACGTTCAGAGAATGGAGAATTTGTA-TCTCCAATC 693 Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAAT 13393 || | ||||| | || |||| | | ||||| | || || | ||||| |||| Sbjct 692 CAGTCGAGAGCCCATTGCGCCTTTTTTCTGACGCACTCCAAGTTGCCGATTGCATTAAGC 633 Query 13394 AAATAAt-----------------ttttttCC---TTACTGTCTAA---AATAT---AAG 13427 ||| | | | | | || ||||| | || ||| | | | Sbjct 632 AAAAAGTCCCTACACAACAAAAGATATATGCCAACTTACTTTTCAACAGAATCTCTGATG 573 Query 13428 TATCTATCAATAAGCTA----TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAA 13483 || |||||||||| |||||||| ||||| ||||| || || || ||||| | Sbjct 572 TAAGTATCAATAAGAAGAGAGTACATTTCAGAATGTATATTCTCAATAGCGATTTGTATG 513 Query 13484 CCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAG-TT 13542 ||||||||||| | | | |||| | ||||||||| | ||| | || | |||| || Sbjct 512 CCATAAAAACAGCGAACTTCTGGGATCTGAACTTCTTGGCTAAACCGCTC-GATAAGATT 454 Query 13543 TTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtttttt 13602 ||| ||||||||| ||||||||||| ||||| ||||| | || | ||| | Sbjct 453 TTCCAAAACTATCCCATCACTAGCAGCGAAAAATGCAAGAACGTAAGATAGAAAGCGTCG 394 Query 13603 ttCGTTTTCTGACAACTTTAA--CCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCA 13660 || | | | | | || ||||| ||||| ||||| || ||||| || ||||| Sbjct 393 CTC--TCCCGGCTTAAGTGAATTCCAATGAGGAAAGTCTTTAGACAAATCAACTTCCTCT 336 Query 13661 ACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATG 13720 || ||||| || ||||| ||||| |||||||| | |||| || || ||| ||||| Sbjct 335 ACTGTCCAGAAGGAAGCCACAGCTTTCTTATAGAATTTCCAAATGTCAGGATACTCAATG 276 Query 13721 GGAAACA 13727 ||||||| Sbjct 275 GGAAACA 269 >seq75644 Length=2520 Score = 145 bits (160), Expect = 7e-30 Identities = 574/891 (64%), Gaps = 53/891 (6%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 |||||| ||||| | ||| | || ||||| ||||||||||| || || | ||| ||||| Sbjct 583 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATT 642 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTAC--ACCCTAATTCTAGT 12976 ||||||||||| || ||||| | | || | | | || | | || | || | Sbjct 643 CTCCATAAAATCAAAGGGATTCTCAG--CATTCCAAATCTTCTCGTAACCAAGCTCGTAT 700 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 | ||| | || |||||||| || | ||| | ||| | |||||||||||| || || Sbjct 701 AGCAAGCGATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATC 760 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 | |||||| || | || || | || || |||||||| || | ||| || | | | Sbjct 761 AGTTTTACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAAT 820 Query 13097 ATGTCTCTTATTACGTTCTCTAATGGAGGATTT----GATAGATGCTTAAACATCATACA 13152 || | | | |||||| || || | | ||| |||| || || |||| | || Sbjct 821 ATAGCA-TAAACACGTTC-CTTATCGGGCTTTTTCACGATA--TGTTTGAACAGAAGGCA 876 Query 13153 TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACC 13212 ||||| || ||| | ||||| || | ||| || || || || || || | || Sbjct 877 AGCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCC 936 Query 13213 CGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTAT 13272 ||||| || || || || |||| ||||||||||| ||||| || ||||| || | Sbjct 937 TGGCATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGAC 996 Query 13273 TCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTAT 13332 |||||| | ||| ||||| ||| | | || || |||| ||| || | || Sbjct 997 TCCTTCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCACCAAT 1056 Query 13333 CCACTTTCTGGCCCAGTTTGC-TTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAA 13391 ||| | |||||| | || ||||||| || | || | | ||| || || |||| Sbjct 1057 CCAGTCAAGGGCCCACTGCGCCTTTTTGTGTA-CACAATCGAGGTTTGTGATGGCATTAA 1115 Query 13392 ATAAATAAttt--------------ttt---------tCCTT----ACTG--TCTAAAAT 13422 | || ||| | ||| | ||| |||| ||| || Sbjct 1116 ACAAGAAATCTCTAAGAAACTTAGATTTAAAAATACATACTTTTCCACTGGATCTCGGAT 1175 Query 13423 ATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAA 13482 ||| ||||| |||| | | |||||| || || ||||||||||| || || || || | Sbjct 1176 ATATGTATCAATCAGAAGACAATACATCTCCGAGTGAATATTTTCTATTGCCATCTGCAT 1235 Query 13483 ACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGT 13541 || ||||| |||| |||| | ||| |||||||| || | ||| | ||| | | | Sbjct 1236 GCCGTAAAAGCATCGGACCTCGGGTACTTGAACTTCTTGACT-AAACCGTTCCACCAGAT 1294 Query 13542 TTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttt 13601 |||| || || || ||||| ||||| || ||||| || | || | ||||| | | Sbjct 1295 TTTCCAGCACAATTCCATCACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAATGTC 1354 Query 13602 tttCGTTTTCTGAC--AACTTTAACCAATCTGGAAAA--TCTTTTGATAAATCTACCTCC 13657 || | ||| | || | | || || || | || ||||| || ||||| ||||| Sbjct 1355 GCTC---TCCTGGCTTAAGTGCATCCCAT-TGCACAATGTCTTTGGACAAATCAACCTCT 1410 Query 13658 TCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCC 13708 ||||| | ||| || |||||||||||||| || || | ||| |||||| Sbjct 1411 TCAACTGACCAGAATGAAGCAACAGCCTTTTTGTAAAATTGCCAGATATCC 1461 >seq110960 Length=1818 Score = 127 bits (140), Expect = 2e-24 Identities = 573/894 (64%), Gaps = 58/894 (6%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 |||||| ||||| | ||| | || ||||| ||||| ||||| || || | ||| ||||| Sbjct 1236 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGATATT 1177 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTAC--ACCCTAATTCTAGT 12976 ||||||||||| || ||||| | | || | | | || | | || | || Sbjct 1176 CTCCATAAAATCAAAGGGATTCTCAG--CATTCCAAATCTTCTCGTAACCAAGCTCGTAC 1119 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 | ||| | || |||||||| || | ||| | ||| | |||||||||||| || || Sbjct 1118 AGCAAGCGATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAATC 1059 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 | ||| || || | || || | || || |||||||| || | ||| || | | | Sbjct 1058 AGTTTGACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAAT 999 Query 13097 ATGTCTCTTATTACGTTCTCTAATGGAGGATTT----GATAGATGCTTAAACATCATACA 13152 || | | | |||||| || || | | ||| |||| || || |||| | || Sbjct 998 ATAGCA-TAAACACGTTC-CTTATCGGGCTTTTTCACGATA--TGTTTGAACAGAAGGCA 943 Query 13153 TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACC 13212 ||||| || ||| | ||||| || | ||| || || || || || || | || Sbjct 942 AGCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCC 883 Query 13213 CGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTAT 13272 ||||| || || || || |||| ||||||||||| ||||| || ||||| || | Sbjct 882 TGGCATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGAC 823 Query 13273 TCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTAT 13332 |||||| | ||| ||||| ||| | | || || |||| ||| || | || Sbjct 822 TCCTTCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCACCAAT 763 Query 13333 CCACTTTCTGGCCCAGTTTGC-TTTTTGTTTAA-----CGCAGTTCAT------------ 13374 ||| | |||||| | || ||||||| || || |||| | Sbjct 762 CCAGTCAAGGGCCCACTGCGCCTTTTTGTGTACACAATCGAGGTTCGTGATGGCATTAAA 703 Query 13375 -----ATTTTCTA-------TTGCGTTAAATAAATA-AtttttttCCTTACTG--TCTAA 13419 | | |||| || || || ||||| || |||||| |||| ||| Sbjct 702 CAAGAAATCTCTAAGAAAACTTAGATTTAA-AAATACATACTTTTCC--ACTGGATCTCG 646 Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||||| ||||| |||| | | |||||| || |||||||||||||| || || || || Sbjct 645 GATATACGTATCAATCAGAAGACAATACATCTCCGAATGAATATTTTCTATTGCCATCTG 586 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTA 13538 | || ||||| |||| |||| | ||| |||||||| || | ||| | ||| | | Sbjct 585 CATGCCGTAAAAGCATCGGACCTCGGGTACTTGAACTTCTTGACT-AAACCGTTCCACCA 527 Query 13539 AGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtt 13598 ||||| || || || ||||| ||||| || ||||| || | || | ||||| | Sbjct 526 GATTTTCCAGCACAATTCCATCACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAAT 467 Query 13599 ttttttCGTTTTCTGAC--AACTTTAACCAATCTGGAAAA--TCTTTTGATAAATCTACC 13654 | || | ||| | || | | || || || | || ||||| || ||||| ||| Sbjct 466 GTCGCTC---TCCTGGCTTAAGTGCATCCCAT-TGCACAATGTCTTTGGACAAATCAACC 411 Query 13655 TCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCC 13708 || ||||| | ||| || ||||| |||||||| || || | ||| |||||| Sbjct 410 TCTTCAACTGACCAGAATGAAGCGACAGCCTTTTTGTAAAATTGCCAGATATCC 357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429320488497996