Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq171037 196 1e-44 seq32333 192 1e-43 seq157544 185 2e-41 seq270304 179 8e-40 seq75644 147 5e-30 seq110960 143 6e-29 seq148469 102 2e-16 seq70016 100 7e-16 seq256849 89.7 1e-12 >seq171037 Length=1136 Score = 196 bits (216), Expect = 1e-44 Identities = 173/216 (80%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || |||||||||||||| || || ||||| || || || || Sbjct 773 AAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCATC 714 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||||||||||||||| ||||| ||||||||||| || || ||||| || || Sbjct 713 TTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTC 654 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| | ||||| || |||| || || || | ||| || || || ||||| || Sbjct 653 TTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAATTGT 594 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||| ||||| |||||||| |||||||| |||||||| Sbjct 593 CTTTCCAGTCAGTGTTTTGACAAATATTTGCATTTT 558 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || || || || || || || || || || ||||||||||||||||||||||| || ||| Sbjct 1015 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 956 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | || | || |||||||||||||||||| |||||||||| | || || ||||| || Sbjct 955 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 896 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 |||||||||||||| || || || ||||| | ||||| || || || || | ||| || Sbjct 895 ATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACT 836 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 835 TCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 789 >seq32333 Length=4216 Score = 192 bits (212), Expect = 1e-43 Identities = 171/214 (80%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || |||||||||||||| || || ||||| || || || || Sbjct 4003 AAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCATC 4062 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||||||||||||||| ||||| ||||||||||| || || ||||| || || Sbjct 4063 TTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTC 4122 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| | ||||| || |||| || || || | ||| || || || ||||| || Sbjct 4123 TTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAATTGT 4182 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| ||||| |||||||| |||||||| |||||| Sbjct 4183 CTTTCCAGTCAGTGTTTTGACAAATATTTGCATT 4216 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || || || || || || || || || || ||||||||||||||||||||||| || ||| Sbjct 3761 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 3820 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | || | || |||||||||||||||||| |||||||||| | || || ||||| || Sbjct 3821 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 3880 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 |||||||||||||| || || || ||||| | ||||| || || || || | ||| || Sbjct 3881 ATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACT 3940 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 3941 TCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 3987 >seq157544 Length=1252 Score = 185 bits (204), Expect = 2e-41 Identities = 168/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||||| || ||||| || ||||| || ||||| || ||||| | ||| || Sbjct 1244 AGGACAAGATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCC 1185 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 ||||| ||||| || ||||||||||| | ||| ||||| || || || || || |||||| Sbjct 1184 TCTAGCTGTTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCC 1125 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || ||||| ||||| |||| |||||||| | || ||||| ||||| |||||| Sbjct 1124 TGAATTTTAGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGATAGTC 1065 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||||||| || ||||| ||||| ||||| Sbjct 1064 TTTCCAGTAAGGGTCTTTACGAATATTTGCAT 1033 >seq270304 Length=645 Score = 179 bits (198), Expect = 8e-40 Identities = 179/232 (77%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 104328 TTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGT 104387 |||| ||||| | || | ||| |||||||| | |||||||| || || |||||||||| Sbjct 73 TTATGCCCCCACGAAGACGAAGAACTAGATGAAGAGTAGATTCCTTTTGTATATTATAGT 132 Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 |||| || || | ||| ||||| || || |||||||| ||||| ||||| || ||||| | Sbjct 133 CAGAAAGTGTACGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTGATCTG 192 Query 104448 GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT 104507 || || ||||| ||||| || |||||||| || |||||||| || |||| | |||| Sbjct 193 AGGGAATACCTTCCTTATCTTGTATCTTTGCCTTCACATTTTCGACAGTATTTGTCGGTT 252 Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || ||||| || ||||| || || || | |||||| ||||| || ||||| Sbjct 253 CAACTTCTAGGGTTATAGTTTTTCCGGTTAATGTTTTAACAAAAATTTGCAT 304 >seq75644 Length=2520 Score = 147 bits (162), Expect = 5e-30 Identities = 221/314 (70%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762 ||||||||||| ||||| || || ||||| ||| | |||||| |||| |||||| Sbjct 1487 TTTGTGATATTGCCAATCCAATATCCGGATATCTGGCAATTTTACAAAAAGGCTGTTGCT 1428 Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTA 268822 || || ||| | || ||||| || ||| |||| | ||| | | | ||| | | Sbjct 1427 TCATTCTGGTCAGTTGAAGAGGTTGATTTGTCCAAAGACATTGTGCAATGGGATGCACTT 1368 Query 268823 AAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGT 268882 || |||| ||| || |||||||| || |||| || || || || | |||||||| Sbjct 1367 AAGCCAGGAGAGCGACATTTTATATCGTACGTTCTCGCTTTCTTCGCTGCCAGTGATGGA 1308 Query 268883 ATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGA 268942 || || |||||||| || || ||| ||||||| || || | || || | | || Sbjct 1307 ATTGTGCTGGAAAATCTGGTGGAACGGTTTAGTCAAGAAGTTCAAGTACCCGAGGTCCGA 1248 Query 268943 TGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTA 269002 || |||||||| | ||||| || |||||||||||||| || |||||||| |||| | Sbjct 1247 TGCTTTTACGGCATGCAGATGGCAATAGAAAATATTCACTCGGAGATGTATTGTCTTCTG 1188 Query 269003 ATAGATACTTATAT 269016 || ||||| ||||| Sbjct 1187 ATTGATACATATAT 1174 >seq110960 Length=1818 Score = 143 bits (158), Expect = 6e-29 Identities = 220/314 (70%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762 || |||||||| ||||| || || ||||| ||| | |||||| |||| || ||| Sbjct 331 TTCGTGATATTGCCAATCCAATATCCGGATATCTGGCAATTTTACAAAAAGGCTGTCGCT 390 Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTA 268822 || || ||| | || ||||| || ||| |||| | ||| | | | ||| | | Sbjct 391 TCATTCTGGTCAGTTGAAGAGGTTGATTTGTCCAAAGACATTGTGCAATGGGATGCACTT 450 Query 268823 AAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGT 268882 || |||| ||| || |||||||| || |||| || || || || | |||||||| Sbjct 451 AAGCCAGGAGAGCGACATTTTATATCGTACGTTCTCGCTTTCTTCGCTGCCAGTGATGGA 510 Query 268883 ATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGA 268942 || || |||||||| || || ||| ||||||| || || | || || | | || Sbjct 511 ATTGTGCTGGAAAATCTGGTGGAACGGTTTAGTCAAGAAGTTCAAGTACCCGAGGTCCGA 570 Query 268943 TGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTA 269002 || |||||||| | ||||| || ||||||||||||||||| |||||||| |||| | Sbjct 571 TGCTTTTACGGCATGCAGATGGCAATAGAAAATATTCATTCGGAGATGTATTGTCTTCTG 630 Query 269003 ATAGATACTTATAT 269016 || ||||| ||||| Sbjct 631 ATTGATACGTATAT 644 >seq148469 Length=1339 Score = 102 bits (112), Expect = 2e-16 Identities = 140/191 (73%), Gaps = 10/191 (5%) Strand=Plus/Plus Query 238593 TGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATG 238652 |||||||| |||||| |||| ||||| ||| |||||| |||||| | ||| | |||||| Sbjct 1027 TGGAATTCTGCCCAGCTACAGATGGTTAGAGAAGGCAAGATGCATGGATTCCTGCGAATG 1086 Query 238653 TATTGGGCTAAAAAGATACTTGAATGGACTAGAT----CTCCAAAGGAAGCTCTTAGATA 238708 |||||||| || || ||||| |||||||| || | ||| | ||||| |||| Sbjct 1087 TATTGGGCAAAGAAAATACTGGAATGGAC-AGCTGAGGGCCCAGAAGAAGC-ATTAGCCC 1144 Query 238709 TAG-TATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAG 238767 ||| |||| || ||||||||||| || || || | ||| || ||||| ||| || Sbjct 1145 TAGCTATTCGCCTCAACGATAAATATAGTCTAGATGGAAGGGACCCCAACGGCTACACAG 1204 Query 238768 GTTGTATGTGG 238778 |||||||| Sbjct 1205 ---GTATGTGG 1212 >seq70016 Length=2671 Score = 100 bits (110), Expect = 7e-16 Identities = 134/182 (74%), Gaps = 7/182 (4%) Strand=Plus/Plus Query 238593 TGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATG 238652 |||||||| |||||| |||| ||||| ||| |||||| |||||| | ||| | |||||| Sbjct 2359 TGGAATTCTGCCCAGCTACAGATGGTTAGAGAAGGCAAGATGCATGGATTCCTGCGAATG 2418 Query 238653 TATTGGGCTAAAAAGATACTTGAATGGACTAGAT----CTCCAAAGGAAGCTCTTAGATA 238708 |||||||| || || ||||| |||||||| || | ||| | ||||| |||| Sbjct 2419 TATTGGGCAAAGAAAATACTGGAATGGAC-AGCTGAGGGCCCAGAAGAAGC-ATTAGCCC 2476 Query 238709 TAG-TATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAG 238767 ||| |||| || ||||||||||| || || || | ||| || ||||| ||| || Sbjct 2477 TAGCTATTCGCCTCAACGATAAATATAGTCTAGATGGAAGGGACCCCAACGGCTACACAG 2536 Query 238768 GT 238769 || Sbjct 2537 GT 2538 >seq256849 Length=689 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || || |||| || ||||| || ||||| || ||||| Sbjct 645 ATCCCACCTCGGAGACGGAGGACAAGGTGTAGAGTTGATTCCTTTTGAATGTTGTAGTCT 586 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||| | ||| || ||||| || || || ||||||||||| | ||| || || || Sbjct 585 GACAAAGTGCGACCATCCTCTAGCTGCTTGCCTGCAAAAATTAGACGCTGCTGGTCTGGT 526 Query 104450 GGTATTCCTTCTTTATCCTGAATC 104473 || || || || |||||||||||| Sbjct 525 GGGATGCCCTCCTTATCCTGAATC 502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1146730804315784