Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 196 1e-44
seq32333 192 1e-43
seq157544 185 2e-41
seq270304 179 8e-40
seq75644 147 5e-30
seq110960 143 6e-29
seq148469 102 2e-16
seq70016 100 7e-16
seq256849 89.7 1e-12
>seq171037
Length=1136
Score = 196 bits (216), Expect = 1e-44
Identities = 173/216 (80%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||| | || || |||||||||||||| || || ||||| || || || ||
Sbjct 773 AAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCATC 714
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| |||||||||||||||||||| ||||| ||||||||||| || || ||||| || ||
Sbjct 713 TTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTC 654
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|||||||| | ||||| || |||| || || || | ||| || || || ||||| ||
Sbjct 653 TTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAATTGT 594
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||| ||||| |||||||| |||||||| ||||||||
Sbjct 593 CTTTCCAGTCAGTGTTTTGACAAATATTTGCATTTT 558
Score = 179 bits (198), Expect = 8e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| || || || || || || || || || ||||||||||||||||||||||| || |||
Sbjct 1015 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 956
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
| || | || |||||||||||||||||| |||||||||| | || || ||||| ||
Sbjct 955 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 896
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|||||||||||||| || || || ||||| | ||||| || || || || | ||| ||
Sbjct 895 ATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACT 836
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| | ||||| ||||| || || || ||||| ||||| ||||||||
Sbjct 835 TCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 789
>seq32333
Length=4216
Score = 192 bits (212), Expect = 1e-43
Identities = 171/214 (80%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||| | || || |||||||||||||| || || ||||| || || || ||
Sbjct 4003 AAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCATC 4062
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| |||||||||||||||||||| ||||| ||||||||||| || || ||||| || ||
Sbjct 4063 TTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTC 4122
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|||||||| | ||||| || |||| || || || | ||| || || || ||||| ||
Sbjct 4123 TTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAATTGT 4182
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
||| ||||| |||||||| |||||||| ||||||
Sbjct 4183 CTTTCCAGTCAGTGTTTTGACAAATATTTGCATT 4216
Score = 179 bits (198), Expect = 8e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| || || || || || || || || || ||||||||||||||||||||||| || |||
Sbjct 3761 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 3820
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
| || | || |||||||||||||||||| |||||||||| | || || ||||| ||
Sbjct 3821 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 3880
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|||||||||||||| || || || ||||| | ||||| || || || || | ||| ||
Sbjct 3881 ATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACT 3940
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| | ||||| ||||| || || || ||||| ||||| ||||||||
Sbjct 3941 TCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 3987
>seq157544
Length=1252
Score = 185 bits (204), Expect = 2e-41
Identities = 168/212 (79%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||||| || ||||| || ||||| || ||||| || ||||| | ||| ||
Sbjct 1244 AGGACAAGATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCC 1185
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
||||| ||||| || ||||||||||| | ||| ||||| || || || || || ||||||
Sbjct 1184 TCTAGCTGTTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCC 1125
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
||||| || ||||| ||||| |||| |||||||| | || ||||| ||||| ||||||
Sbjct 1124 TGAATTTTAGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGATAGTC 1065
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| |||||||| || ||||| ||||| |||||
Sbjct 1064 TTTCCAGTAAGGGTCTTTACGAATATTTGCAT 1033
>seq270304
Length=645
Score = 179 bits (198), Expect = 8e-40
Identities = 179/232 (77%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 104328 TTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGT 104387
|||| ||||| | || | ||| |||||||| | |||||||| || || ||||||||||
Sbjct 73 TTATGCCCCCACGAAGACGAAGAACTAGATGAAGAGTAGATTCCTTTTGTATATTATAGT 132
Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447
|||| || || | ||| ||||| || || |||||||| ||||| ||||| || ||||| |
Sbjct 133 CAGAAAGTGTACGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTGATCTG 192
Query 104448 GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT 104507
|| || ||||| ||||| || |||||||| || |||||||| || |||| | ||||
Sbjct 193 AGGGAATACCTTCCTTATCTTGTATCTTTGCCTTCACATTTTCGACAGTATTTGTCGGTT 252
Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| || ||||| || ||||| || || || | |||||| ||||| || |||||
Sbjct 253 CAACTTCTAGGGTTATAGTTTTTCCGGTTAATGTTTTAACAAAAATTTGCAT 304
>seq75644
Length=2520
Score = 147 bits (162), Expect = 5e-30
Identities = 221/314 (70%), Gaps = 0/314 (0%)
Strand=Plus/Minus
Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762
||||||||||| ||||| || || ||||| ||| | |||||| |||| ||||||
Sbjct 1487 TTTGTGATATTGCCAATCCAATATCCGGATATCTGGCAATTTTACAAAAAGGCTGTTGCT 1428
Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTA 268822
|| || ||| | || ||||| || ||| |||| | ||| | | | ||| | |
Sbjct 1427 TCATTCTGGTCAGTTGAAGAGGTTGATTTGTCCAAAGACATTGTGCAATGGGATGCACTT 1368
Query 268823 AAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGT 268882
|| |||| ||| || |||||||| || |||| || || || || | ||||||||
Sbjct 1367 AAGCCAGGAGAGCGACATTTTATATCGTACGTTCTCGCTTTCTTCGCTGCCAGTGATGGA 1308
Query 268883 ATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGA 268942
|| || |||||||| || || ||| ||||||| || || | || || | | ||
Sbjct 1307 ATTGTGCTGGAAAATCTGGTGGAACGGTTTAGTCAAGAAGTTCAAGTACCCGAGGTCCGA 1248
Query 268943 TGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTA 269002
|| |||||||| | ||||| || |||||||||||||| || |||||||| |||| |
Sbjct 1247 TGCTTTTACGGCATGCAGATGGCAATAGAAAATATTCACTCGGAGATGTATTGTCTTCTG 1188
Query 269003 ATAGATACTTATAT 269016
|| ||||| |||||
Sbjct 1187 ATTGATACATATAT 1174
>seq110960
Length=1818
Score = 143 bits (158), Expect = 6e-29
Identities = 220/314 (70%), Gaps = 0/314 (0%)
Strand=Plus/Plus
Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762
|| |||||||| ||||| || || ||||| ||| | |||||| |||| || |||
Sbjct 331 TTCGTGATATTGCCAATCCAATATCCGGATATCTGGCAATTTTACAAAAAGGCTGTCGCT 390
Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTA 268822
|| || ||| | || ||||| || ||| |||| | ||| | | | ||| | |
Sbjct 391 TCATTCTGGTCAGTTGAAGAGGTTGATTTGTCCAAAGACATTGTGCAATGGGATGCACTT 450
Query 268823 AAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGT 268882
|| |||| ||| || |||||||| || |||| || || || || | ||||||||
Sbjct 451 AAGCCAGGAGAGCGACATTTTATATCGTACGTTCTCGCTTTCTTCGCTGCCAGTGATGGA 510
Query 268883 ATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGA 268942
|| || |||||||| || || ||| ||||||| || || | || || | | ||
Sbjct 511 ATTGTGCTGGAAAATCTGGTGGAACGGTTTAGTCAAGAAGTTCAAGTACCCGAGGTCCGA 570
Query 268943 TGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTA 269002
|| |||||||| | ||||| || ||||||||||||||||| |||||||| |||| |
Sbjct 571 TGCTTTTACGGCATGCAGATGGCAATAGAAAATATTCATTCGGAGATGTATTGTCTTCTG 630
Query 269003 ATAGATACTTATAT 269016
|| ||||| |||||
Sbjct 631 ATTGATACGTATAT 644
>seq148469
Length=1339
Score = 102 bits (112), Expect = 2e-16
Identities = 140/191 (73%), Gaps = 10/191 (5%)
Strand=Plus/Plus
Query 238593 TGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATG 238652
|||||||| |||||| |||| ||||| ||| |||||| |||||| | ||| | ||||||
Sbjct 1027 TGGAATTCTGCCCAGCTACAGATGGTTAGAGAAGGCAAGATGCATGGATTCCTGCGAATG 1086
Query 238653 TATTGGGCTAAAAAGATACTTGAATGGACTAGAT----CTCCAAAGGAAGCTCTTAGATA 238708
|||||||| || || ||||| |||||||| || | ||| | ||||| ||||
Sbjct 1087 TATTGGGCAAAGAAAATACTGGAATGGAC-AGCTGAGGGCCCAGAAGAAGC-ATTAGCCC 1144
Query 238709 TAG-TATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAG 238767
||| |||| || ||||||||||| || || || | ||| || ||||| ||| ||
Sbjct 1145 TAGCTATTCGCCTCAACGATAAATATAGTCTAGATGGAAGGGACCCCAACGGCTACACAG 1204
Query 238768 GTTGTATGTGG 238778
||||||||
Sbjct 1205 ---GTATGTGG 1212
>seq70016
Length=2671
Score = 100 bits (110), Expect = 7e-16
Identities = 134/182 (74%), Gaps = 7/182 (4%)
Strand=Plus/Plus
Query 238593 TGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATG 238652
|||||||| |||||| |||| ||||| ||| |||||| |||||| | ||| | ||||||
Sbjct 2359 TGGAATTCTGCCCAGCTACAGATGGTTAGAGAAGGCAAGATGCATGGATTCCTGCGAATG 2418
Query 238653 TATTGGGCTAAAAAGATACTTGAATGGACTAGAT----CTCCAAAGGAAGCTCTTAGATA 238708
|||||||| || || ||||| |||||||| || | ||| | ||||| ||||
Sbjct 2419 TATTGGGCAAAGAAAATACTGGAATGGAC-AGCTGAGGGCCCAGAAGAAGC-ATTAGCCC 2476
Query 238709 TAG-TATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAG 238767
||| |||| || ||||||||||| || || || | ||| || ||||| ||| ||
Sbjct 2477 TAGCTATTCGCCTCAACGATAAATATAGTCTAGATGGAAGGGACCCCAACGGCTACACAG 2536
Query 238768 GT 238769
||
Sbjct 2537 GT 2538
>seq256849
Length=689
Score = 89.7 bits (98), Expect = 1e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || |||| || | || || || |||| || ||||| || ||||| || |||||
Sbjct 645 ATCCCACCTCGGAGACGGAGGACAAGGTGTAGAGTTGATTCCTTTTGAATGTTGTAGTCT 586
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| | ||| | ||| || ||||| || || || ||||||||||| | ||| || || ||
Sbjct 585 GACAAAGTGCGACCATCCTCTAGCTGCTTGCCTGCAAAAATTAGACGCTGCTGGTCTGGT 526
Query 104450 GGTATTCCTTCTTTATCCTGAATC 104473
|| || || || ||||||||||||
Sbjct 525 GGGATGCCCTCCTTATCCTGAATC 502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1146730804315784
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |