Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq157544 93.3 4e-14 >seq157544 Length=1252 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||||||||||| || | || | || || | ||||| ||||| || || | | Sbjct 1223 TCCTTTTGAATGTTGTAGTCTGACAGAGTG-CGACCATCCTCTAGCTGTTTGCCTGCAAA 1165 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||||| ||||||||||||| || | | ||||| ||| |||||| || | | Sbjct 1164 AATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCCTGAATTTTAGCTTTCACATT 1105 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | |||| |||||| | ||||| ||||| ||| || || || || || || || || || Sbjct 1104 CTCTATCGTATCGCTCGACTCAACCTCGAGTGTGATAGTCTTTCCAGTAAGGGTCTTTAC 1045 Query 48715 AAAAATCTGCATCGT 48729 || || |||||||| Sbjct 1044 GAATATTTGCATCGT 1030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419626812984398