Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 136 4e-27
seq32333 136 4e-27
seq270304 95.1 1e-14
>seq171037
Length=1136
Score = 136 bits (150), Expect = 4e-27
Identities = 172/232 (74%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||| || | || | ||||| ||||||||||||||| || || | |||||||||
Sbjct 1015 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCG--G 958
Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
||| ||| || || || || ||||||||| |||| ||||||| |||||| || || |
Sbjct 957 ATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGG 898
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCG 94957
|||| |||||||| || | ||||| || |||| | | || |||||| | || |||
Sbjct 897 GAATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCA-CTTGATTCG 839
Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| || | || || || || || || |||||||| ||||| ||||||||||
Sbjct 838 ACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCATGC 787
Score = 89.7 bits (98), Expect = 5e-13
Identities = 150/211 (71%), Gaps = 7/211 (3%)
Strand=Plus/Minus
Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGT--TGGAATCCTC 94857
|||| || | ||| || || || || | || ||||| | |||| || || ||| ||
Sbjct 768 CAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATC--TGATAGGGTCCTGCCATCTTC 711
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| |||||||| |||| || | ||||| ||||| || ||||||||||| ||||| |
Sbjct 710 GAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTCTTG 651
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGATGGTTT 94976
||| || | ||| ||| | | |||||| | || || || |||| || || || |
Sbjct 650 AATCTTCGACTTTACGTTCTCTATTGTGTCA-CTTGATTCCACTTCAAGAGTAATTGTCT 592
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||||| || ||||| ||||| || |||||
Sbjct 591 TTCCAGTCAGTGTTTTGACAAATATTTGCAT 561
>seq32333
Length=4216
Score = 136 bits (150), Expect = 4e-27
Identities = 172/232 (74%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||| || | || | ||||| ||||||||||||||| || || | |||||||||
Sbjct 3761 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCG--G 3818
Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
||| ||| || || || || ||||||||| |||| ||||||| |||||| || || |
Sbjct 3819 ATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGG 3878
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCG 94957
|||| |||||||| || | ||||| || |||| | | || |||||| | || |||
Sbjct 3879 GAATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCA-CTTGATTCG 3937
Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| || | || || || || || || |||||||| ||||| ||||||||||
Sbjct 3938 ACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCATGC 3989
Score = 89.7 bits (98), Expect = 5e-13
Identities = 150/211 (71%), Gaps = 7/211 (3%)
Strand=Plus/Plus
Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGT--TGGAATCCTC 94857
|||| || | ||| || || || || | || ||||| | |||| || || ||| ||
Sbjct 4008 CAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATC--TGATAGGGTCCTGCCATCTTC 4065
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| |||||||| |||| || | ||||| ||||| || ||||||||||| ||||| |
Sbjct 4066 GAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTCTTG 4125
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGATGGTTT 94976
||| || | ||| ||| | | |||||| | || || || |||| || || || |
Sbjct 4126 AATCTTCGACTTTACGTTCTCTATTGTGTCA-CTTGATTCCACTTCAAGAGTAATTGTCT 4184
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||||| || ||||| ||||| || |||||
Sbjct 4185 TTCCAGTCAGTGTTTTGACAAATATTTGCAT 4215
>seq270304
Length=645
Score = 95.1 bits (104), Expect = 1e-14
Identities = 142/200 (71%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTT 94867
||||||||||||||| | ||||| || | ||||| || ||| || ||||| |||
Sbjct 107 AGTAGATTCCTTTTGTATATTATAGTCAG--AAAGTGTACGACCATCTTCAAGCTGCTTT 164
Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927
|| | || || | ||||||||||||| ||||||||||| || || | || ||||||
Sbjct 165 CCAGCGAAAATAAGCCTTTGCTGATCTGAGGGAATACCTTCCTTATCTTGTATCTTTGCC 224
Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987
|| || ||||||| | | | || || || | || || |||||||| || |
Sbjct 225 TTCACATTTTCGACAGTATTTGTCGGTTCAACTTCTAGGGTTATAGTTTTTCCGGTTAAT 284
Query 94988 GTTTTCACAAAGATCTGCAT 95007
||||| ||||| || |||||
Sbjct 285 GTTTTAACAAAAATTTGCAT 304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 446518219511280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |