Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq171037 136 4e-27 seq32333 136 4e-27 seq270304 95.1 1e-14 >seq171037 Length=1136 Score = 136 bits (150), Expect = 4e-27 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| || | || | ||||| ||||||||||||||| || || | ||||||||| Sbjct 1015 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCG--G 958 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||| ||| || || || || ||||||||| |||| ||||||| |||||| || || | Sbjct 957 ATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGG 898 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCG 94957 |||| |||||||| || | ||||| || |||| | | || |||||| | || ||| Sbjct 897 GAATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCA-CTTGATTCG 839 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || | || || || || || || |||||||| ||||| |||||||||| Sbjct 838 ACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCATGC 787 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/211 (71%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGT--TGGAATCCTC 94857 |||| || | ||| || || || || | || ||||| | |||| || || ||| || Sbjct 768 CAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATC--TGATAGGGTCCTGCCATCTTC 711 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || |||||||| |||| || | ||||| ||||| || ||||||||||| ||||| | Sbjct 710 GAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTCTTG 651 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGATGGTTT 94976 ||| || | ||| ||| | | |||||| | || || || |||| || || || | Sbjct 650 AATCTTCGACTTTACGTTCTCTATTGTGTCA-CTTGATTCCACTTCAAGAGTAATTGTCT 592 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| || ||||| ||||| || ||||| Sbjct 591 TTCCAGTCAGTGTTTTGACAAATATTTGCAT 561 >seq32333 Length=4216 Score = 136 bits (150), Expect = 4e-27 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| || | || | ||||| ||||||||||||||| || || | ||||||||| Sbjct 3761 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCG--G 3818 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||| ||| || || || || ||||||||| |||| ||||||| |||||| || || | Sbjct 3819 ATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGG 3878 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCG 94957 |||| |||||||| || | ||||| || |||| | | || |||||| | || ||| Sbjct 3879 GAATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCA-CTTGATTCG 3937 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || | || || || || || || |||||||| ||||| |||||||||| Sbjct 3938 ACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCATGC 3989 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/211 (71%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGT--TGGAATCCTC 94857 |||| || | ||| || || || || | || ||||| | |||| || || ||| || Sbjct 4008 CAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATC--TGATAGGGTCCTGCCATCTTC 4065 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || |||||||| |||| || | ||||| ||||| || ||||||||||| ||||| | Sbjct 4066 GAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTCTTG 4125 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGATGGTTT 94976 ||| || | ||| ||| | | |||||| | || || || |||| || || || | Sbjct 4126 AATCTTCGACTTTACGTTCTCTATTGTGTCA-CTTGATTCCACTTCAAGAGTAATTGTCT 4184 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| || ||||| ||||| || ||||| Sbjct 4185 TTCCAGTCAGTGTTTTGACAAATATTTGCAT 4215 >seq270304 Length=645 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTT 94867 ||||||||||||||| | ||||| || | ||||| || ||| || ||||| ||| Sbjct 107 AGTAGATTCCTTTTGTATATTATAGTCAG--AAAGTGTACGACCATCTTCAAGCTGCTTT 164 Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 || | || || | ||||||||||||| ||||||||||| || || | || |||||| Sbjct 165 CCAGCGAAAATAAGCCTTTGCTGATCTGAGGGAATACCTTCCTTATCTTGTATCTTTGCC 224 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || || ||||||| | | | || || || | || || |||||||| || | Sbjct 225 TTCACATTTTCGACAGTATTTGTCGGTTCAACTTCTAGGGTTATAGTTTTTCCGGTTAAT 284 Query 94988 GTTTTCACAAAGATCTGCAT 95007 ||||| ||||| || ||||| Sbjct 285 GTTTTAACAAAAATTTGCAT 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446518219511280