Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1833 170 3e-38
seq3424 150 3e-32
seq140431 141 1e-29
seq195627 129 9e-26
seq214153 114 2e-21
>seq1833
Length=10311
Score = 170 bits (188), Expect = 3e-38
Identities = 199/269 (74%), Gaps = 0/269 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||| ||||||| | || ||||||||||| ||||| ||||||||||| || ||
Sbjct 2912 GCTAAGCGCCATCGCAAAGTCCTACGAGATAACATTCAAGGTATCACCAAGCCTGCAATT 2971
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
| ||||| || || |||||||| || ||||| |||| || | |||||||||| |
Sbjct 2972 AGGCGTCTCGCACGCCGTGGTGGCGTTAAGCGCATCTCCGGGCTCATCTATGAAGAAACC 3031
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
| | || | ||| |||| || ||| ||||| | |||||| | |||||||||
Sbjct 3032 AGGGGCGTGCTCAAGGTCTTTCTTGAGAATGTTATTCGCGATGCTGTAACATATACCGAG 3091
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| |||||||| ||||| |||||| | ||||| |||||||||| | || || ||||||
Sbjct 3092 CATGCTAAACGAAAGACCGTCACCGCAATGGACGTCGTCTATGCCCTCAAGCGCCAAGGC 3151
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATC 16701
|| | | | || || |||||| | || ||
Sbjct 3152 CGCACGCTGTACGGCTTTGGAGGCTAGTC 3180
>seq3424
Length=8951
Score = 150 bits (166), Expect = 3e-32
Identities = 190/261 (73%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||| ||||| | | ||| || || || || ||||| || || || || || ||
Sbjct 8504 CGCTAAGCGCCATCGTAAAGTTCTCCGGGACAATATTCAAGGCATTACTAAACCCGCCAT 8563
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
| | || || ||||| || || || || || || | ||||| | |||| |||||||
Sbjct 8564 CAGGCGCCTTGCTCGACGAGGGGGCGTGAAACGAATTTCTGGCCTCATCTACGAAGAGAC 8623
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||||| || | ||| | |||||| ||| ||| |||| |||||| || ||||| ||
Sbjct 8624 TCGTGGAGTGCTCAAGGTGTTCCTCGAGAACGTCATCCGCGATGCTGTCACGTATACAGA 8683
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||||||| || |||||||| || ||||||| | ||||| ||| | || || || ||
Sbjct 8684 GCACGCTAAGCGCAAGACTGTTACTGCCATGGACGTAGTCTACGCACTCAAGCGCCAGGG 8743
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||||| ||||||| || ||
Sbjct 8744 CCGTACCCTTTATGGCTTCGG 8764
>seq140431
Length=1425
Score = 141 bits (156), Expect = 1e-29
Identities = 182/251 (73%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
|||| | || || ||||| || ||||| ||||| ||||| || || || ||| | |||||
Sbjct 696 TCTTAGGGACAATATCCAGGGTATCACAAAGCCTGCTATACGCCGACTTGCTAGACGTGG 755
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
||| || ||||| | || ||| | |||| || |||| |||| || | || ||||
Sbjct 756 TGGCGTGAAGCGCATTTCCGGACTTATCTACGAGGAGACCCGTGGGGTCCTCAAAGTCTT 815
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
| | | | || |||| ||| ||| || |||||||||||| || || || || |||||
Sbjct 816 CTTGGAAAATGTAATCCGTGACGCTGTCACCTATACCGAGCATGCAAAGCGCAAAACTGT 875
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
||| |||||||| | ||||| || | ||||| || ||||| | | ||||| |||||
Sbjct 876 TACCGCCATGGATGTTGTCTACGCCCTTAAACGCCAGGGCCGCACTTTGTATGGCTTTGG 935
Query 16693 AAGTTAATCTT 16703
|||||||||
Sbjct 936 TGGTTAATCTT 946
>seq195627
Length=964
Score = 129 bits (142), Expect = 9e-26
Identities = 161/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || ||||||||||| || ||||||||||| || ||||| || ||||| || | ||
Sbjct 715 CTGCGGGATAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGCCTGGCACGCAGAGGG 774
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
||||||||||| |||| || | |||| || |||| ||| | || | || | |||
Sbjct 775 GGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGACTCGCGGGGTGCTCAAAGTTTTC 834
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| ||| |||||||| || || || ||| ||||||||||| || | ||||| ||
Sbjct 835 CTGGAGAACGTTATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACCGTT 894
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
||| | |||||| | || ||||| |||| || || || ||
Sbjct 895 ACCGCTATGGATGTGGTGTATGCTCTGAAGCGCCAGGGACG 935
>seq214153
Length=859
Score = 114 bits (126), Expect = 2e-21
Identities = 141/193 (73%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
|||| | || || ||||| || ||||| ||||| ||||| || || || ||| | |||||
Sbjct 663 TCTTAGGGACAATATCCAGGGTATCACAAAGCCTGCTATACGCCGACTTGCTAGACGTGG 722
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
||| || ||||| | |||||| | |||| || || | |||| || | || ||||
Sbjct 723 TGGCGTGAAGCGCATTTCTGGACTTATCTACGAGGAAACCCGTGGGGTCCTCAAAGTCTT 782
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
| | ||| || |||| ||| ||| || |||||||||||| || || || || |||||
Sbjct 783 CTTGGAGAATGTAATCCGTGACGCTGTCACCTATACCGAGCATGCAAAGCGCAAAACTGT 842
Query 16633 CACCTCCATGGAT 16645
||| ||||||||
Sbjct 843 TACCGCCATGGAT 855
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 78785915093814
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |