Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1833 170 3e-38 seq3424 150 3e-32 seq140431 141 1e-29 seq195627 129 9e-26 seq214153 114 2e-21 >seq1833 Length=10311 Score = 170 bits (188), Expect = 3e-38 Identities = 199/269 (74%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||||| | || ||||||||||| ||||| ||||||||||| || || Sbjct 2912 GCTAAGCGCCATCGCAAAGTCCTACGAGATAACATTCAAGGTATCACCAAGCCTGCAATT 2971 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||||| || || |||||||| || ||||| |||| || | |||||||||| | Sbjct 2972 AGGCGTCTCGCACGCCGTGGTGGCGTTAAGCGCATCTCCGGGCTCATCTATGAAGAAACC 3031 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | || | ||| |||| || ||| ||||| | |||||| | ||||||||| Sbjct 3032 AGGGGCGTGCTCAAGGTCTTTCTTGAGAATGTTATTCGCGATGCTGTAACATATACCGAG 3091 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||||||| ||||| |||||| | ||||| |||||||||| | || || |||||| Sbjct 3092 CATGCTAAACGAAAGACCGTCACCGCAATGGACGTCGTCTATGCCCTCAAGCGCCAAGGC 3151 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATC 16701 || | | | || || |||||| | || || Sbjct 3152 CGCACGCTGTACGGCTTTGGAGGCTAGTC 3180 >seq3424 Length=8951 Score = 150 bits (166), Expect = 3e-32 Identities = 190/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||||| | | ||| || || || || ||||| || || || || || || Sbjct 8504 CGCTAAGCGCCATCGTAAAGTTCTCCGGGACAATATTCAAGGCATTACTAAACCCGCCAT 8563 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | || || ||||| || || || || || || | ||||| | |||| ||||||| Sbjct 8564 CAGGCGCCTTGCTCGACGAGGGGGCGTGAAACGAATTTCTGGCCTCATCTACGAAGAGAC 8623 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || | ||| | |||||| ||| ||| |||| |||||| || ||||| || Sbjct 8624 TCGTGGAGTGCTCAAGGTGTTCCTCGAGAACGTCATCCGCGATGCTGTCACGTATACAGA 8683 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| || |||||||| || ||||||| | ||||| ||| | || || || || Sbjct 8684 GCACGCTAAGCGCAAGACTGTTACTGCCATGGACGTAGTCTACGCACTCAAGCGCCAGGG 8743 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||||| ||||||| || || Sbjct 8744 CCGTACCCTTTATGGCTTCGG 8764 >seq140431 Length=1425 Score = 141 bits (156), Expect = 1e-29 Identities = 182/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||| | || || ||||| || ||||| ||||| ||||| || || || ||| | ||||| Sbjct 696 TCTTAGGGACAATATCCAGGGTATCACAAAGCCTGCTATACGCCGACTTGCTAGACGTGG 755 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || ||||| | || ||| | |||| || |||| |||| || | || |||| Sbjct 756 TGGCGTGAAGCGCATTTCCGGACTTATCTACGAGGAGACCCGTGGGGTCCTCAAAGTCTT 815 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | | | || |||| ||| ||| || |||||||||||| || || || || ||||| Sbjct 816 CTTGGAAAATGTAATCCGTGACGCTGTCACCTATACCGAGCATGCAAAGCGCAAAACTGT 875 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||||||| | ||||| || | ||||| || ||||| | | ||||| ||||| Sbjct 876 TACCGCCATGGATGTTGTCTACGCCCTTAAACGCCAGGGCCGCACTTTGTATGGCTTTGG 935 Query 16693 AAGTTAATCTT 16703 ||||||||| Sbjct 936 TGGTTAATCTT 946 >seq195627 Length=964 Score = 129 bits (142), Expect = 9e-26 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||||||||| || ||||| || ||||| || | || Sbjct 715 CTGCGGGATAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGCCTGGCACGCAGAGGG 774 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||||||||| |||| || | |||| || |||| ||| | || | || | ||| Sbjct 775 GGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGACTCGCGGGGTGCTCAAAGTTTTC 834 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||||||| || || || ||| ||||||||||| || | ||||| || Sbjct 835 CTGGAGAACGTTATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACCGTT 894 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| | |||||| | || ||||| |||| || || || || Sbjct 895 ACCGCTATGGATGTGGTGTATGCTCTGAAGCGCCAGGGACG 935 >seq214153 Length=859 Score = 114 bits (126), Expect = 2e-21 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||| | || || ||||| || ||||| ||||| ||||| || || || ||| | ||||| Sbjct 663 TCTTAGGGACAATATCCAGGGTATCACAAAGCCTGCTATACGCCGACTTGCTAGACGTGG 722 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || ||||| | |||||| | |||| || || | |||| || | || |||| Sbjct 723 TGGCGTGAAGCGCATTTCTGGACTTATCTACGAGGAAACCCGTGGGGTCCTCAAAGTCTT 782 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| || |||| ||| ||| || |||||||||||| || || || || ||||| Sbjct 783 CTTGGAGAATGTAATCCGTGACGCTGTCACCTATACCGAGCATGCAAAGCGCAAAACTGT 842 Query 16633 CACCTCCATGGAT 16645 ||| |||||||| Sbjct 843 TACCGCCATGGAT 855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78785915093814