Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq150668 145 8e-30 seq75644 105 7e-18 seq110960 100 3e-16 >seq150668 Length=1318 Score = 145 bits (160), Expect = 8e-30 Identities = 334/498 (67%), Gaps = 4/498 (1%) Strand=Plus/Minus Query 21188 TGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCC 21247 || || || | ||| | || ||||||||||| || || || |||| |||||| |||| Sbjct 1163 TGGTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATTTTCC 1104 Query 21248 ATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAAT 21307 ||||||||||| |||||||| || || | || || || |||| ||||| || | | Sbjct 1103 ATAAAATCAAACGGATTTTCGGAGTTCCAAATCTTCTTGTAACCAAGTTCAGACAGAAGA 1044 Query 21308 CTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTT 21367 | ||| || ||||| ||||| || ||||||| | | |||||||| || || | | Sbjct 1043 CGATCAGCCACAAACTCTATGTAGCGACACATAAGAGCGCAATTCATCCCAATGAGACTG 984 Query 21368 ACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTT 21427 || || | ||| | || | ||| || || || || || || | |||||| Sbjct 983 ACGGGCAAAGCATCAGTGAGAAATTCTTGCTCAATTTTTACTGCCTCCTCCATTATAGAA 924 Query 21428 ATTATCCTAGATGTACTAGGGGGATACAATAAT-TGTTTAAACATCAAACATGCAAAATC 21486 ||||| | | | || | |||| || || ||||| | | || || ||||| Sbjct 923 TGGATCCT-CTTCTCTTCCGGTTTTGCAATGATATGCTTAAATAGGAGGCAAGCGAAATC 865 Query 21487 ACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAA 21546 ||||||| || ||||| | |||||| | ||||| || || | |||||||| | Sbjct 864 GCAATGCAGTCCCTCATCTCGACTTATAAGCTCATTGCTGAAGGTGAGGCCGGGCATAAG 805 Query 21547 TCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTCAA 21605 || | |||||| | ||||||||| | ||||| ||| ||||| ||||||| || || | Sbjct 804 ACCACGCTTTTTAAGCCAAAATATCGCGGCAAA-GCTGCCTGAGAAGAAAACACCTTCTA 746 Query 21606 CGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTT 21665 | || ||||| || | | |||||| | ||| ||| | | |||| ||||| | Sbjct 745 CAGCTGCAAAAGCTGCGACACGTTCAGAGAATGGAGAATTTGTATCTCCAATCCAGTCGA 686 Query 21666 CTGCCCATTTTGCCTTTT 21683 ||||||| ||||||| Sbjct 685 GAGCCCATTGCGCCTTTT 668 >seq75644 Length=2520 Score = 105 bits (116), Expect = 7e-18 Identities = 203/297 (68%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 || |||||| || || || ||||||||||| || ||||| | |||||||| |||| | Sbjct 1194 ACAATACATCTCCGAGTGAATATTTTCTATTGCCATCTGCATGCCGTAAAAGCATCGGAC 1253 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 ||| | |||||| || | ||| |||| ||| ||||| || |||||||| Sbjct 1254 CTCGGGTACTTGAACTTCTTGACTAAACCGTTCCACCAGATTTTCCAGCACAATTCCATC 1313 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945 |||||| || || || || | | | |||||||| ||| || | | |||| | Sbjct 1314 ACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAATGTCGCTC-TCCTGGCTTAAGTG 1372 Query 21946 TTTCCAATCTAATAA-ATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAA 22004 ||| || | || ||||| || ||||| || |||||| || ||| || ||||| Sbjct 1373 CATCCCATTGCACAATGTCTTTGGACAAATCAACCTCTTCAACTGACCAGAATGAAGCAA 1432 Query 22005 TAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACC 22061 ||||||||| || | ||||||||| |||| ||||| ||||| ||||||| Sbjct 1433 CAGCCTTTTTGTAAAATTGCCAGATATCCGGATATTGGATTGGCAATATCACAAACC 1489 Score = 96.9 bits (106), Expect = 4e-15 Identities = 297/456 (65%), Gaps = 14/456 (3%) Strand=Plus/Plus Query 21170 GACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCT 21229 |||||||| | |||||| || || | ||| | || || || || ||||| || || Sbjct 569 GACATAATGTTCGCTTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCC 628 Query 21230 TCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA 21289 || | || ||| |||||||||||||| ||||| |||| || | || || | || Sbjct 629 TCGATCGAGATATTCTCCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAA 688 Query 21290 CCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAA 21349 || || || ||| || | ||| || |||||||| | || | ||||| | ||||| Sbjct 689 CCAAGCTCGTATAGCAAGCGATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAG 748 Query 21350 TTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACG 21409 ||||| || |||| |||||| || | || | | || |||| |||||||| | Sbjct 749 TTCATGCCAATCAGTTTTACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAAT 808 Query 21410 GCTTCAACAATTATATTTATTATCCTAGATGTAC--TAGGGGGAT-----ACAATAATTG 21462 || || || || || || | | || | || ||| | || ||| || Sbjct 809 GCCTC----CTTGAATATAGCAT-AAACACGTTCCTTATCGGGCTTTTTCACGATA--TG 861 Query 21463 TTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATT 21522 ||| |||| | || ||||| || || | ||||| || | ||| || | |||||| Sbjct 862 TTTGAACAGAAGGCAAGCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATT 921 Query 21523 AGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC 21582 || || || || ||||| | || | ||| || | ||||||||| |||||||| Sbjct 922 GCTGAAGGTCAAGCCTGGCATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACT 981 Query 21583 TCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGC 21618 || |||||||| | || || | |||||||| || Sbjct 982 GCCGGAAAAGAAGACTCCTTCGATTGCAGCAAAGGC 1017 >seq110960 Length=1818 Score = 100 bits (110), Expect = 3e-16 Identities = 202/297 (68%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 || |||||| || ||||| ||||||||||| || ||||| | |||||||| |||| | Sbjct 624 ACAATACATCTCCGAATGAATATTTTCTATTGCCATCTGCATGCCGTAAAAGCATCGGAC 565 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 ||| | |||||| || | ||| |||| ||| ||||| || |||||||| Sbjct 564 CTCGGGTACTTGAACTTCTTGACTAAACCGTTCCACCAGATTTTCCAGCACAATTCCATC 505 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945 |||||| || || || || | | | |||||||| ||| || | | |||| | Sbjct 504 ACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAATGTCGCTC-TCCTGGCTTAAGTG 446 Query 21946 TTTCCAATCTAATAA-ATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAA 22004 ||| || | || ||||| || ||||| || |||||| || ||| || ||| | Sbjct 445 CATCCCATTGCACAATGTCTTTGGACAAATCAACCTCTTCAACTGACCAGAATGAAGCGA 386 Query 22005 TAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACC 22061 ||||||||| || | ||||||||| |||| ||||| ||||| || |||| Sbjct 385 CAGCCTTTTTGTAAAATTGCCAGATATCCGGATATTGGATTGGCAATATCACGAACC 329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529797145633520