Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq150668 145 8e-30
seq75644 105 7e-18
seq110960 100 3e-16
>seq150668
Length=1318
Score = 145 bits (160), Expect = 8e-30
Identities = 334/498 (67%), Gaps = 4/498 (1%)
Strand=Plus/Minus
Query 21188 TGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCC 21247
|| || || | ||| | || ||||||||||| || || || |||| |||||| ||||
Sbjct 1163 TGGTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATTTTCC 1104
Query 21248 ATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAAT 21307
||||||||||| |||||||| || || | || || || |||| ||||| || | |
Sbjct 1103 ATAAAATCAAACGGATTTTCGGAGTTCCAAATCTTCTTGTAACCAAGTTCAGACAGAAGA 1044
Query 21308 CTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTT 21367
| ||| || ||||| ||||| || ||||||| | | |||||||| || || | |
Sbjct 1043 CGATCAGCCACAAACTCTATGTAGCGACACATAAGAGCGCAATTCATCCCAATGAGACTG 984
Query 21368 ACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTT 21427
|| || | ||| | || | ||| || || || || || || | ||||||
Sbjct 983 ACGGGCAAAGCATCAGTGAGAAATTCTTGCTCAATTTTTACTGCCTCCTCCATTATAGAA 924
Query 21428 ATTATCCTAGATGTACTAGGGGGATACAATAAT-TGTTTAAACATCAAACATGCAAAATC 21486
||||| | | | || | |||| || || ||||| | | || || |||||
Sbjct 923 TGGATCCT-CTTCTCTTCCGGTTTTGCAATGATATGCTTAAATAGGAGGCAAGCGAAATC 865
Query 21487 ACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAA 21546
||||||| || ||||| | |||||| | ||||| || || | |||||||| |
Sbjct 864 GCAATGCAGTCCCTCATCTCGACTTATAAGCTCATTGCTGAAGGTGAGGCCGGGCATAAG 805
Query 21547 TCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTCAA 21605
|| | |||||| | ||||||||| | ||||| ||| ||||| ||||||| || || |
Sbjct 804 ACCACGCTTTTTAAGCCAAAATATCGCGGCAAA-GCTGCCTGAGAAGAAAACACCTTCTA 746
Query 21606 CGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTT 21665
| || ||||| || | | |||||| | ||| ||| | | |||| ||||| |
Sbjct 745 CAGCTGCAAAAGCTGCGACACGTTCAGAGAATGGAGAATTTGTATCTCCAATCCAGTCGA 686
Query 21666 CTGCCCATTTTGCCTTTT 21683
||||||| |||||||
Sbjct 685 GAGCCCATTGCGCCTTTT 668
>seq75644
Length=2520
Score = 105 bits (116), Expect = 7e-18
Identities = 203/297 (68%), Gaps = 2/297 (1%)
Strand=Plus/Plus
Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825
|| |||||| || || || ||||||||||| || ||||| | |||||||| |||| |
Sbjct 1194 ACAATACATCTCCGAGTGAATATTTTCTATTGCCATCTGCATGCCGTAAAAGCATCGGAC 1253
Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885
||| | |||||| || | ||| |||| ||| ||||| || ||||||||
Sbjct 1254 CTCGGGTACTTGAACTTCTTGACTAAACCGTTCCACCAGATTTTCCAGCACAATTCCATC 1313
Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945
|||||| || || || || | | | |||||||| ||| || | | |||| |
Sbjct 1314 ACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAATGTCGCTC-TCCTGGCTTAAGTG 1372
Query 21946 TTTCCAATCTAATAA-ATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAA 22004
||| || | || ||||| || ||||| || |||||| || ||| || |||||
Sbjct 1373 CATCCCATTGCACAATGTCTTTGGACAAATCAACCTCTTCAACTGACCAGAATGAAGCAA 1432
Query 22005 TAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACC 22061
||||||||| || | ||||||||| |||| ||||| ||||| |||||||
Sbjct 1433 CAGCCTTTTTGTAAAATTGCCAGATATCCGGATATTGGATTGGCAATATCACAAACC 1489
Score = 96.9 bits (106), Expect = 4e-15
Identities = 297/456 (65%), Gaps = 14/456 (3%)
Strand=Plus/Plus
Query 21170 GACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCT 21229
|||||||| | |||||| || || | ||| | || || || || ||||| || ||
Sbjct 569 GACATAATGTTCGCTTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCC 628
Query 21230 TCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA 21289
|| | || ||| |||||||||||||| ||||| |||| || | || || | ||
Sbjct 629 TCGATCGAGATATTCTCCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAA 688
Query 21290 CCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAA 21349
|| || || ||| || | ||| || |||||||| | || | ||||| | |||||
Sbjct 689 CCAAGCTCGTATAGCAAGCGATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAG 748
Query 21350 TTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACG 21409
||||| || |||| |||||| || | || | | || |||| |||||||| |
Sbjct 749 TTCATGCCAATCAGTTTTACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAAT 808
Query 21410 GCTTCAACAATTATATTTATTATCCTAGATGTAC--TAGGGGGAT-----ACAATAATTG 21462
|| || || || || || | | || | || ||| | || ||| ||
Sbjct 809 GCCTC----CTTGAATATAGCAT-AAACACGTTCCTTATCGGGCTTTTTCACGATA--TG 861
Query 21463 TTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATT 21522
||| |||| | || ||||| || || | ||||| || | ||| || | ||||||
Sbjct 862 TTTGAACAGAAGGCAAGCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATT 921
Query 21523 AGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC 21582
|| || || || ||||| | || | ||| || | ||||||||| ||||||||
Sbjct 922 GCTGAAGGTCAAGCCTGGCATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACT 981
Query 21583 TCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGC 21618
|| |||||||| | || || | |||||||| ||
Sbjct 982 GCCGGAAAAGAAGACTCCTTCGATTGCAGCAAAGGC 1017
>seq110960
Length=1818
Score = 100 bits (110), Expect = 3e-16
Identities = 202/297 (68%), Gaps = 2/297 (1%)
Strand=Plus/Minus
Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825
|| |||||| || ||||| ||||||||||| || ||||| | |||||||| |||| |
Sbjct 624 ACAATACATCTCCGAATGAATATTTTCTATTGCCATCTGCATGCCGTAAAAGCATCGGAC 565
Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885
||| | |||||| || | ||| |||| ||| ||||| || ||||||||
Sbjct 564 CTCGGGTACTTGAACTTCTTGACTAAACCGTTCCACCAGATTTTCCAGCACAATTCCATC 505
Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945
|||||| || || || || | | | |||||||| ||| || | | |||| |
Sbjct 504 ACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAATGTCGCTC-TCCTGGCTTAAGTG 446
Query 21946 TTTCCAATCTAATAA-ATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAA 22004
||| || | || ||||| || ||||| || |||||| || ||| || ||| |
Sbjct 445 CATCCCATTGCACAATGTCTTTGGACAAATCAACCTCTTCAACTGACCAGAATGAAGCGA 386
Query 22005 TAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACC 22061
||||||||| || | ||||||||| |||| ||||| ||||| || ||||
Sbjct 385 CAGCCTTTTTGTAAAATTGCCAGATATCCGGATATTGGATTGGCAATATCACGAACC 329
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 529797145633520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |