Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 122 8e-23
seq32333 118 1e-21
seq150668 105 6e-18
seq270304 96.9 3e-15
seq157544 87.8 2e-12
>seq171037
Length=1136
Score = 122 bits (134), Expect = 8e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
||||||||| | ||||| |||||| | |||||||| | || || | ||| | ||||||
Sbjct 558 AAAATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCA 617
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
| ||||| || ||| | || || |||||| ||||| ||||| || || || |||
Sbjct 618 AGTGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGAT 677
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|||||||| || |||| | || |||||||||||||||| || | | | || ||
Sbjct 678 CAACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTAC 737
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|| ||||| ||||| || ||| | ||||| || ||
Sbjct 738 AATATTCAGAAAGAGTCAACTCTTCATCTTGTGCT 772
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| ||||| | || || || | || || | ||| | |||||||
Sbjct 789 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 848
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||| | || | ||||| || || || |||||||| || || || || ||
Sbjct 849 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 908
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
||| || | |||| | ||| |||||||| ||||| | | | | ||| |||||
Sbjct 909 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAAT 968
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
||||| |||||||||||| | || ||||| || ||||| || |||||
Sbjct 969 ATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAGGGGAGG 1015
>seq32333
Length=4216
Score = 118 bits (130), Expect = 1e-21
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827
||||||| | ||||| |||||| | |||||||| | || || | ||| | |||||||
Sbjct 4216 AATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCAAG 4157
Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887
||||| || ||| | || || |||||| ||||| ||||| || || || |||||
Sbjct 4156 TGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGATCA 4097
Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947
|||||| || |||| | || |||||||||||||||| || | | | || || ||
Sbjct 4096 ACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTACAA 4037
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||| ||||| || ||| | ||||| || ||
Sbjct 4036 TATTCAGAAAGAGTCAACTCTTCATCTTGTGCT 4004
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| ||||| | || || || | || || | ||| | |||||||
Sbjct 3987 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 3928
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||| | || | ||||| || || || |||||||| || || || || ||
Sbjct 3927 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 3868
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
||| || | |||| | ||| |||||||| ||||| | | | | ||| |||||
Sbjct 3867 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAAT 3808
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
||||| |||||||||||| | || ||||| || ||||| || |||||
Sbjct 3807 ATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAGGGGAGG 3761
>seq150668
Length=1318
Score = 105 bits (116), Expect = 6e-18
Identities = 154/214 (72%), Gaps = 3/214 (1%)
Strand=Plus/Minus
Query 119639 CCGCTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTT 119698
|| || ||| ||||| || || || || |||||||| || |||||||| |||||||| ||
Sbjct 1167 CCTCTGGTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATT 1108
Query 119699 ATTCATAAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAA 119758
| |||||| || || |||||| | | ||| || ||| | ||| || | || |||
Sbjct 1107 TTCCATAAAATCAAACGGATTTTCGGAGTTCCAAATCTTCTTGTAACCAAGTTCAGACAG 1048
Query 119759 CAGTCGATCTGCCACAAACTCGATGTATTCGCACAT-GGATTGCGAATTCATGCCCAACA 119817
|| ||||| ||||||||||| ||||| ||||| || || ||||||| || | |
Sbjct 1047 AAGACGATCAGCCACAAACTCTATGTAGCGACACATAAGAGCGC-AATTCATCCCAATGA 989
Query 119818 TAGCGACCGGTAAAGCATTGGTAAAGAAATCCTT 119851
| ||| || ||||||| || |||||| |||
Sbjct 988 GACTGACGGGCAAAGCATCAGT-GAGAAATTCTT 956
>seq270304
Length=645
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | ||||| ||||||||||| |||||| | || ||| | ||| | ||| | |
Sbjct 304 ATGCAAATTTTTGTTAAAACATTAACCGGAAAAACTATAACCCTAGAAGTTGAACCGACA 245
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
| || |||| | || || |||||| || || ||||| || || | |||||
Sbjct 244 AATACTGTCGAAAATGTGAAGGCAAAGATACAAGATAAGGAAGGTATTCCCTCAGATCAG 185
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
||||| || |||| || || || || || ||||||| | | | | ||||||||
Sbjct 184 CAAAGGCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTTCTGACTATAAT 125
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAAAAT 27001
|| ||||| ||||||||| | ||||| || || | ||| | || || | |||
Sbjct 124 ATACAAAAGGAATCTACTCTTCATCTAGTTCTTCGTCTTCGTGGGGGCATAAT 72
>seq157544
Length=1252
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | || ||||| || | |||||||| | ||||| |||| | || || | |
Sbjct 1033 ATGCAAATATTCGTAAAGACCCTTACTGGAAAGACTATCACACTCGAGGTTGAGTCGAGC 1092
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|| || || ||| | || ||| || ||| || || || || || || || |||||
Sbjct 1093 GATACGATAGAGAATGTGAAAGCTAAAATTCAGGATAAGGAGGGCATCCCACCGGATCAG 1152
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC--GTCAGCGACTATA 26946
|| | || |||| | |||||||| || || |||| | | | ||||| |||| |
Sbjct 1153 CAGCGTCTAATTTTTGCAGGCAAACAGCTAGAGGATGGTCGCACTCTGTCAG--ACTACA 1210
Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|||||||||| ||||| ||| | ||||| |||||
Sbjct 1211 ACATTCAAAAGGAATCAACTCTACATCTTGTCCT 1244
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476769302174560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |