Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq93010 197 4e-45 seq150668 118 3e-21 >seq93010 Length=2134 Score = 197 bits (218), Expect = 4e-45 Identities = 582/892 (65%), Gaps = 44/892 (5%) Strand=Plus/Plus Query 363447 TGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGA 363506 |||||| || ||||||||| | ||| | || | |||||||| || | || | || Sbjct 213 TGAACGTCCTCAGCATATGCTGATGAGAGTCTCAATTGGTATTCACTTTGATGACATAGA 272 Query 363507 TGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGT-GTA-TTCACGCACGCCACGCCA 363564 || | |||||| || || ||| | || || | || || || ||||| | || Sbjct 273 GGCAGTCTGTGAAACCTACAA-CTTG-ATGTCCTTGAAGTGGTTTACTCACGCTTCCCCC 330 Query 363565 ACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATG 363624 || | | ||| |||| || | | || |||||||| || |||||| | | |||| Sbjct 331 ACTCTCTTTAATTCTGGTACACCAAGGCCCCAGATGTCCAGCTGTTTTCTTGTCACAATG 390 Query 363625 AAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAG 363684 ||||| || ||| ||||| || | ||| ||||| | | ||||| |||||||| || Sbjct 391 AAGGATGACAGCATTGAGGGCATTTATGATACACTCCGGCAATGTGCCCTTATTTCTAAA 450 Query 363685 AATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACAT---T 363741 | ||| || || ||||||||| || || || | | | | | || | ||| | | Sbjct 451 AGTGCTGGGGGTATTGGTGTAA--ATGTTCATTG--CATACGCGGCACTGGTACCTATAT 506 Query 363742 CGC-GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 || || || || ||||| ||||| || || || ||| | ||||| ||| ||||||| Sbjct 507 TGCTGGTACGAATGGTTACTCCAATGGACTTGTGCCAATGTTACGTGTTTTTAACAATAC 566 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGA 363860 ||| | |||||||| |||||||| | | | || || ||||| || |||||||| Sbjct 567 TGCTCGCTACGTCGATCAGGGTGGTAACAGGAGGCCTGGTGCCTTTGCCATCTATCTCGA 626 Query 363861 GCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGA 363920 ||| ||| | || ||| | || | || | || || ||||| || ||| || Sbjct 627 GCCATGGCATACGGACATTCTCTCCTTCGTAGAATTACGCAAGAACACTGGTGCAGAAGA 686 Query 363921 ATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGT 363980 | ||||| | ||||| || ||||| |||||| | | || | |||||| || || Sbjct 687 GGTTCGTGCTAGGGATCTTTTTTATGCCCTTTGGATCCCCGATCTGTTTATGCGCCGTGT 746 Query 363981 GGAGGCAGGTAAGAATTGGTCACTCTTTTGC--CCACACGAATGTCCAGGTCTTTCCGAT 364038 ||||| | | ||| | |||| || || ||||||||||| || ||||| ||| Sbjct 747 TGAGGCTAATGGCGACTGG--AGTCTTATGGATCCGCACGAATGTCCTGGCCTTTCTGAT 804 Query 364039 GTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGT 364098 | |||||||| | | || | | || ||||||| ||||||| |||||| || || | Sbjct 805 TTGTGGGGTGATCAATTTGATTCACTTTACGAAAGGTATGAAAGGGAGGGCAAAGCGAGA 864 Query 364099 AAGACAATTCCCGCACAG----------AAGCTAT------------------GGTTTGC 364130 || |||| || ||| ||| | | ||| ||| Sbjct 865 CGAACTCTTCCGGCTCAGGAAGTCTGGTAAGTTGTTGTCGTCTTTTTATTGCAGGTATGC 924 Query 364131 CATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAA 364190 ||| || || | || || || || || | || | ||| | ||||||||||| ||||| Sbjct 925 CATTATTGAAGCACAAATAGAAACTGGGAATCCATTCATGCTCTACAAAGATTCCTGCAA 984 Query 364191 CCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGAT 364250 || || || || || |||||||||||||| || | ||||| |||| || || || Sbjct 985 TCGTAAATCGAATCACCAGCACCTTGGTACTCTTAAATGCAGCAATTTATGCACTGAAAT 1044 Query 364251 TATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATC 364302 | |||| || || ||||||| || | ||| || |||||||| || || ||| Sbjct 1045 TCTTGAGTATACATCTCCCGATGAAATTGCTGTTTGTAACCTAGCCTCTATC 1096 >seq150668 Length=1318 Score = 118 bits (130), Expect = 3e-21 Identities = 301/455 (66%), Gaps = 5/455 (1%) Strand=Plus/Plus Query 22481 CATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCA 22539 ||||| | |||||| | || ||||| | || ||||| ||||||| || || ||| Sbjct 713 CATTCTCTGAACGTGTCGCAGCTTTTGCAGCTGTAGAAGGTGTTTTCTTCTCAGGCAGC- 771 Query 22540 TTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAAT 22599 ||| || || |||||||| ||||| |||| ||||||| || || || || ||| Sbjct 772 TTTGCCGCGATATTTTGGCTTAAAAAGCGTGGTCTTATGCCCGGCCTCACCTTCAGCAAT 831 Query 22600 GAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAAT 22659 ||| | || || ||||||||||| || ||| |||||| || || | |||| | || Sbjct 832 GAGCTTATAAGTCGAGATGAGGGACTGCATTGCGATTTCGCTTGCCTCCTATTT---AAG 888 Query 22660 CATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAA 22719 ||||||||| |||| | | | | | | | ||| || | ||||| || Sbjct 889 CATATCATTGCAAAACCGGAAGAGAAGAGGATCCATTCTATAATGGAGGAGGCAGTAAAA 948 Query 22720 CTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAA 22779 |||| | |||| | || || || || || ||||||||||| || ||| || Sbjct 949 ATTGAGCAAGAATTTCTCACTGATGCTTTGCCCGTCAGTCTCATTGGGATGAATTGCGCT 1008 Query 22780 TCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCA 22839 ||| || || || | ||||| || |||||||| | | ||| ||||| Sbjct 1009 CTTATGTGTCGCTACATAGAGTTTGTGGCTGATCGTCTTCTGTCTGAACTTGGTTACAAG 1068 Query 22840 AAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAG 22899 ||| || ||| || ||||| ||||| | |||||| ||| || || || || || Sbjct 1069 AAGATTTGGAACTCCGAAAATCCGTTTGATTTTATGGAAAATATATCTCTGGAGGGCAAA 1128 Query 22900 ACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCA 22934 |||||||| ||||| || | ||||| |||||||| Sbjct 1129 ACCAATTTTTTCGAGAAGCGCGTTGGCGAATACCA 1163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1298070000823236