Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq150668 125 6e-24
seq171037 114 1e-20
seq32333 111 1e-19
seq270304 84.2 2e-11
>seq150668
Length=1318
Score = 125 bits (138), Expect = 6e-24
Identities = 362/546 (66%), Gaps = 27/546 (5%)
Strand=Plus/Minus
Query 104592 GTATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCAT 104651
||||||||| || || || || |||||||| || |||||||||||||| ||||| | |||
Sbjct 1161 GTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATTTTCCAT 1102
Query 104652 AAATTCGAAAGGA--TTCAAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAGT 104709
||| || || ||| ||| ||| | |||| || || ||| ||||| || || ||
Sbjct 1101 AAAATCAAACGGATTTTCGGAGT-TCCAAATCTTCTT-GTAACCAAGTTCAGACAGAAGA 1044
Query 104710 CGATCCGCCACAAATTCGATGTACTCGCACATAGAATGTGC-ATTCATGCCCAGCATTGC 104768
||||| |||||||| || ||||| |||||| | | || |||||| || | |
Sbjct 1043 CGATCAGCCACAAACTCTATGTAGCGACACATA-AGAGCGCAATTCATCCCAATGAGACT 985
Query 104769 GACGGGTAAAGCGTTAGTaaaaaaaTCTTTCTCGATGTCCACGGCTTCCTTAAACATGTT 104828
|||||| ||||| | ||| | ||| |||| ||| || | || || |||| | ||
Sbjct 984 GACGGGCAAAGCATCAGTGAGAAATTCTTGCTCAATTTTTACTGCCTCCTCCATTATAGA 925
Query 104829 CAGCACCTTGCTTTCAGAAAGCTTGTCCTCTTTGGCAATATATTTGTTGTAATA-GAGGC 104887
| | | | ||| || ||| ||| ||||| || || | |||| |||||
Sbjct 924 ATGGATCCT-CTT--------CTCTTCCGGTTTTGCAAT-GATATGCTTAAATAGGAGGC 875
Query 104888 AGGCAAAGTCTGTGTGCAATCCTTCATCTCTAGAAATAAGTTCGTTGCTGTAAGTCAAGC 104947
| || || || |||| ||| ||||||| | ||||| || |||||| | || | ||
Sbjct 874 AAGCGAAATCGCAATGCAGTCCCTCATCTCGACTTATAAGCTCATTGCTGAAGGTGAGGC 815
Query 104948 CAGG--TAGAGCCCCtttttttGTGTCTTTAATATAGTAGATGGCAGCAAAACTACCGGA 105005
| || || || | ||||| | | || || || || ||||| || || ||
Sbjct 814 CGGGCATAAGACCACGCTTTTTAAGCC---AAAAT-----ATCGCGGCAAAGCTGCCTGA 763
Query 105006 GAAAAAGACACCTTCGACGATGGCAAACGCGACCATGCGTTCGGCGAATGTAGCAGTTTG 105065
||| || |||||||| || ||||| || | | ||||| | ||||| || | ||
Sbjct 762 GAAGAAAACACCTTCTACAGCTGCAAAAGCTGCGACACGTTCAGAGAATGGAGAATTTGT 703
Query 105066 ACTTTCAATCCATTTCTGAGCCCATGTTGCCTTCCGTTTGACGCTATCAATGTGCTCGAT 105125
| | ||||||| | |||||||| ||||| | |||||| || | || ||||
Sbjct 702 ATCTCCAATCCAGTCGAGAGCCCATTGCGCCTTTTTTCTGACGCACTCCAAGTTGCCGAT 643
Query 105126 GGCATT 105131
|||||
Sbjct 642 TGCATT 637
>seq171037
Length=1136
Score = 114 bits (126), Expect = 1e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
||||||||| | ||||| |||||| | |||||||| | ||||| | ||||| || |
Sbjct 558 AAAATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCA 617
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
| ||||| || ||| | || || |||||| ||||| ||||| || || || |||
Sbjct 618 AGTGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGAT 677
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167
||||| || || |||| | || || ||||||||||||| ||| | | | |||||
Sbjct 678 CAACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTAC 737
Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200
|| ||||| ||||| || || ||||| | |||
Sbjct 738 AATATTCAGAAAGAGTCAACTCTTCATCTTGTG 770
>seq32333
Length=4216
Score = 111 bits (122), Expect = 1e-19
Identities = 151/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
||||||| | ||||| |||||| | |||||||| | ||||| | ||||| || | |
Sbjct 4216 AATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCAAG 4157
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
||||| || ||| | || || |||||| ||||| ||||| || || || |||||
Sbjct 4156 TGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGATCA 4097
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
||| || || |||| | || || ||||||||||||| ||| | | | ||||| ||
Sbjct 4096 ACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTACAA 4037
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200
||||| ||||| || || ||||| | |||
Sbjct 4036 TATTCAGAAAGAGTCAACTCTTCATCTTGTG 4006
>seq270304
Length=645
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| ||||||||||| |||||| | || ||| | ||||| || | |
Sbjct 304 ATGCAAATTTTTGTTAAAACATTAACCGGAAAAACTATAACCCTAGAAGTTGAACCGACA 245
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
| || |||| | || || |||||| || || ||||| || || | |||||
Sbjct 244 AATACTGTCGAAAATGTGAAGGCAAAGATACAAGATAAGGAAGGTATTCCCTCAGATCAG 185
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| || || |||| || || ||||| || ||||||| | | | || |||||
Sbjct 184 CAAAGGCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTTCTGACTATAAT 125
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199
|| ||||| |||||||| ||||| ||||
Sbjct 124 ATACAAAAGGAATCTACTCTTCATCTAGT 96
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428278123521690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |