Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq150668 125 6e-24 seq171037 114 1e-20 seq32333 111 1e-19 seq270304 84.2 2e-11 >seq150668 Length=1318 Score = 125 bits (138), Expect = 6e-24 Identities = 362/546 (66%), Gaps = 27/546 (5%) Strand=Plus/Minus Query 104592 GTATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCAT 104651 ||||||||| || || || || |||||||| || |||||||||||||| ||||| | ||| Sbjct 1161 GTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATTTTCCAT 1102 Query 104652 AAATTCGAAAGGA--TTCAAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAGT 104709 ||| || || ||| ||| ||| | |||| || || ||| ||||| || || || Sbjct 1101 AAAATCAAACGGATTTTCGGAGT-TCCAAATCTTCTT-GTAACCAAGTTCAGACAGAAGA 1044 Query 104710 CGATCCGCCACAAATTCGATGTACTCGCACATAGAATGTGC-ATTCATGCCCAGCATTGC 104768 ||||| |||||||| || ||||| |||||| | | || |||||| || | | Sbjct 1043 CGATCAGCCACAAACTCTATGTAGCGACACATA-AGAGCGCAATTCATCCCAATGAGACT 985 Query 104769 GACGGGTAAAGCGTTAGTaaaaaaaTCTTTCTCGATGTCCACGGCTTCCTTAAACATGTT 104828 |||||| ||||| | ||| | ||| |||| ||| || | || || |||| | || Sbjct 984 GACGGGCAAAGCATCAGTGAGAAATTCTTGCTCAATTTTTACTGCCTCCTCCATTATAGA 925 Query 104829 CAGCACCTTGCTTTCAGAAAGCTTGTCCTCTTTGGCAATATATTTGTTGTAATA-GAGGC 104887 | | | | ||| || ||| ||| ||||| || || | |||| ||||| Sbjct 924 ATGGATCCT-CTT--------CTCTTCCGGTTTTGCAAT-GATATGCTTAAATAGGAGGC 875 Query 104888 AGGCAAAGTCTGTGTGCAATCCTTCATCTCTAGAAATAAGTTCGTTGCTGTAAGTCAAGC 104947 | || || || |||| ||| ||||||| | ||||| || |||||| | || | || Sbjct 874 AAGCGAAATCGCAATGCAGTCCCTCATCTCGACTTATAAGCTCATTGCTGAAGGTGAGGC 815 Query 104948 CAGG--TAGAGCCCCtttttttGTGTCTTTAATATAGTAGATGGCAGCAAAACTACCGGA 105005 | || || || | ||||| | | || || || || ||||| || || || Sbjct 814 CGGGCATAAGACCACGCTTTTTAAGCC---AAAAT-----ATCGCGGCAAAGCTGCCTGA 763 Query 105006 GAAAAAGACACCTTCGACGATGGCAAACGCGACCATGCGTTCGGCGAATGTAGCAGTTTG 105065 ||| || |||||||| || ||||| || | | ||||| | ||||| || | || Sbjct 762 GAAGAAAACACCTTCTACAGCTGCAAAAGCTGCGACACGTTCAGAGAATGGAGAATTTGT 703 Query 105066 ACTTTCAATCCATTTCTGAGCCCATGTTGCCTTCCGTTTGACGCTATCAATGTGCTCGAT 105125 | | ||||||| | |||||||| ||||| | |||||| || | || |||| Sbjct 702 ATCTCCAATCCAGTCGAGAGCCCATTGCGCCTTTTTTCTGACGCACTCCAAGTTGCCGAT 643 Query 105126 GGCATT 105131 ||||| Sbjct 642 TGCATT 637 >seq171037 Length=1136 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | ||||| |||||| | |||||||| | ||||| | ||||| || | Sbjct 558 AAAATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCA 617 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | ||||| || ||| | || || |||||| ||||| ||||| || || || ||| Sbjct 618 AGTGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGAT 677 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||| || || |||| | || || ||||||||||||| ||| | | | ||||| Sbjct 678 CAACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTAC 737 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||| ||||| || || ||||| | ||| Sbjct 738 AATATTCAGAAAGAGTCAACTCTTCATCTTGTG 770 >seq32333 Length=4216 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| |||||| | |||||||| | ||||| | ||||| || | | Sbjct 4216 AATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCAAG 4157 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || ||| | || || |||||| ||||| ||||| || || || ||||| Sbjct 4156 TGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGATCA 4097 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| || || |||| | || || ||||||||||||| ||| | | | ||||| || Sbjct 4096 ACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTACAA 4037 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| ||||| || || ||||| | ||| Sbjct 4036 TATTCAGAAAGAGTCAACTCTTCATCTTGTG 4006 >seq270304 Length=645 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||||||||| |||||| | || ||| | ||||| || | | Sbjct 304 ATGCAAATTTTTGTTAAAACATTAACCGGAAAAACTATAACCCTAGAAGTTGAACCGACA 245 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 | || |||| | || || |||||| || || ||||| || || | ||||| Sbjct 244 AATACTGTCGAAAATGTGAAGGCAAAGATACAAGATAAGGAAGGTATTCCCTCAGATCAG 185 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || || |||| || || ||||| || ||||||| | | | || ||||| Sbjct 184 CAAAGGCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTTCTGACTATAAT 125 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| |||||||| ||||| |||| Sbjct 124 ATACAAAAGGAATCTACTCTTCATCTAGT 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428278123521690