Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 118 9e-22
seq32333 114 1e-20
seq157544 93.3 4e-14
>seq171037
Length=1136
Score = 118 bits (130), Expect = 9e-22
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342
||||||||||| ||||||||||| || || ||||| || ||||| | ||| ||| ||
Sbjct 558 AAAATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCA 617
Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402
|| ||||| | | | ||||| || ||| || || ||||| | || ||||
Sbjct 618 AGTGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGAT 677
Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462
|| ||||| ||||||| ||| || |||||| | ||||||| || ||| | | |||||
Sbjct 678 CAACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTAC 737
Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTG 115495
|| ||||| |||||||| ||| | ||| | |||
Sbjct 738 AATATTCAGAAAGAGTCAACTCTTCATCTTGTG 770
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| |||||||| ||||| || ||||| || || ||||| | ||| || || ||
Sbjct 789 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 848
Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405
||||| || | | | | ||| ||||| ||||||||||| | ||| ||| |||
Sbjct 849 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 908
Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465
||| || | |||| ||| || |||||| ||||||| || | ||||||||||
Sbjct 909 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAAT 968
Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
||||| ||||| |||||| | || ||||| | ||| | | |||||
Sbjct 969 ATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAGGGGAGG 1015
>seq32333
Length=4216
Score = 114 bits (126), Expect = 1e-20
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344
||||||||| ||||||||||| || || ||||| || ||||| | ||| ||| || ||
Sbjct 4216 AATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCAAG 4157
Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| | | | ||||| || ||| || || ||||| | || ||||||
Sbjct 4156 TGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGATCA 4097
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||||| ||||||| ||| || |||||| | ||||||| || ||| | | ||||| ||
Sbjct 4096 ACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTACAA 4037
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495
||||| |||||||| ||| | ||| | |||
Sbjct 4036 TATTCAGAAAGAGTCAACTCTTCATCTTGTG 4006
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| |||||||| ||||| || ||||| || || ||||| | ||| || || ||
Sbjct 3987 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 3928
Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405
||||| || | | | | ||| ||||| ||||||||||| | ||| ||| |||
Sbjct 3927 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 3868
Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465
||| || | |||| ||| || |||||| ||||||| || | ||||||||||
Sbjct 3867 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAAT 3808
Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
||||| ||||| |||||| | || ||||| | ||| | | |||||
Sbjct 3807 ATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAGGGGAGG 3761
>seq157544
Length=1252
Score = 93.3 bits (102), Expect = 4e-14
Identities = 154/219 (70%), Gaps = 4/219 (2%)
Strand=Plus/Plus
Query 115274 AAGAGATTAAAA--ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCG 115331
|| ||| ||||| |||||||| || || || || || || ||||| || || || |||
Sbjct 1019 AATAGAATAAAACGATGCAAATATTCGTAAAGACCCTTACTGGAAAGACTATCACACTCG 1078
Query 115332 AAACGGAGTCCAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGC 115390
| ||||| ||||| || | | || || || ||| |||||| ||||| || |||
Sbjct 1079 AGGTTGAGTCGAGCGATAC-GATAGAGAATGTGAAAGCTAAAATTCAGGATAAGGAGGGC 1137
Query 115391 GTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACC 115450
|||| |||||||| | || |||| ||| |||||||| |||| |||| ||
Sbjct 1138 ATCCCACCGGATCAGCAGCGTCTAATTTTTGCAGGCAAACAGCTAGAGGATGGTCGCACT 1197
Query 115451 ATGGCCGATTATAACATTCAAAAAGAGTCTACTATACAT 115489
|| | || || ||||||||||| || || ||| |||||
Sbjct 1198 CTGTCAGACTACAACATTCAAAAGGAATCAACTCTACAT 1236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 423703830735760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |