Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq157544 118 1e-21 seq110960 107 2e-18 seq75644 100 3e-16 seq256849 98.7 9e-16 seq171037 91.5 1e-13 seq32333 91.5 1e-13 seq295945 87.8 2e-12 seq150668 84.2 2e-11 >seq157544 Length=1252 Score = 118 bits (130), Expect = 1e-21 Identities = 169/234 (72%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || | ||||| || || ||||||||||||||||| || || ||||| Sbjct 1248 ACGGAGGACAAGATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACC 1189 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 ||||||||||| |||||||| | |||| ||||||||| ||||| ||||| || || || Sbjct 1188 ATCCTCTAGCTGTTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTT 1129 Query 131139 GTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAA 131197 || ||| ||| || || | | ||| | |||||| | ||||| | |||| || | Sbjct 1128 ATC-CTGAATTTTAGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGA 1070 Query 131198 CGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT-GACTTATTTTATTCCT 131250 || || || || || || |||||||| || ||||| | ||||| |||| || Sbjct 1069 TAGTCTTTCCAGTAAGGGTCTTTACGAATATTTGCATCGTTTTATTCTATTTCT 1016 >seq110960 Length=1818 Score = 107 bits (118), Expect = 2e-18 Identities = 305/460 (66%), Gaps = 19/460 (4%) Strand=Plus/Plus Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 || || ||||||||||| | |||||||| | || || ||||| ||||| |||||| Sbjct 781 ACGTTTGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGT 840 Query 46204 TTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263 ||||| | || |||| | || | ||| | ||||| ||| |||| || ||||| Sbjct 841 TTTGCGTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAGCAAT 900 Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTC-TCTACTATAACAC 46322 || || || |||||||| ||||| || || |||||||| || | ||| | |||| Sbjct 901 GAACTTATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAAACA- 959 Query 46323 TCGCGTGCACGACAAGCTTGCGCCCGA----CACCGTGCTGA-GC-ATGTTCAAGGAGGC 46376 | ||| || || |||||| | |||| | | || || ||||||||||| Sbjct 960 TATCGT----GAAAA-----AGCCCGATAAGGAACGTGTTTATGCTATATTCAAGGAGGC 1010 Query 46377 GGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAA 46436 ||| || || |||| || |||| | || | |||| ||| | |||||||| Sbjct 1011 ATTGGAGATAGAAAAGGCTTTCTTTAATGAGGCCTTACCCGTCAAACTGATTGGCATGAA 1070 Query 46437 CGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGC-AGCTTC 46495 | | |||||| |||| |||| ||||| || || || |||| || | ||||| Sbjct 1071 CTGTGATATGATGTGCCGCTACCTCGAATTTGTTGCCGATCGCTTGCT-GTACGAGCTTG 1129 Query 46496 ACCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGG 46555 | |||| || | || ||||| ||||| |||||| | || ||||| | | Sbjct 1130 GTTACGAGAAGATTTGGAATGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCG 1189 Query 46556 AGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 |||||||||| || || || || ||||| || || || || Sbjct 1190 AGGGCAAAACGAACTTCTTTGAGAAGCGTGTTGGGGAATA 1229 >seq75644 Length=2520 Score = 100 bits (110), Expect = 3e-16 Identities = 301/459 (66%), Gaps = 17/459 (4%) Strand=Plus/Minus Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 || || ||||||||||| | |||||||| | || || ||||| ||||| |||||| Sbjct 1038 ACGTTTGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGT 979 Query 46204 TTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263 ||||| | || |||| | || | ||| | ||||| ||| |||| || ||||| Sbjct 978 TTTGCGTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAGCAAT 919 Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTC-TCTACTATAACAC 46322 || || || |||||||| ||||| || || |||||||| || | ||| | |||| Sbjct 918 GAACTTATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAAACA- 860 Query 46323 TCGCGTGCACGACAAGCTTGCGCCCGA----CACCGTGCTGA-GC-ATGTTCAAGGAGGC 46376 | ||| || || |||||| | |||| | | || || ||||||||||| Sbjct 859 TATCGT----GAAAA-----AGCCCGATAAGGAACGTGTTTATGCTATATTCAAGGAGGC 809 Query 46377 GGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAA 46436 ||| || || |||| || |||| | || | |||| ||| | |||||||| Sbjct 808 ATTGGAGATAGAAAAGGCTTTCTTTAATGAGGCCTTACCCGTAAAACTGATTGGCATGAA 749 Query 46437 CGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCA 46496 | | |||||| ||| |||| ||||| || || || |||| ||||| Sbjct 748 CTGTGATATGATGTGCCGTTACCTCGAATTTGTTGCCGATCGCTTGCTATACGAGCTTGG 689 Query 46497 CCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGA 46556 | |||| || | || ||||| ||||| |||||| | || ||||| | || Sbjct 688 TTACGAGAAGATTTGGAATGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGA 629 Query 46557 GGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 ||||||||| || || || || ||||| || || || || Sbjct 628 GGGCAAAACAAACTTCTTTGAGAAGCGTGTTGGGGAATA 590 >seq256849 Length=689 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | |||| || || ||||||||||||||||| || | Sbjct 642 CCACCTCGGAGACGGAGGACAAGGTGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGAC 583 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||||||||||||||||| | |||| |||||||||||| || ||| Sbjct 582 AAAGTGCGACCATCCTCTAGCTGCTTGCCTGCAAAAATTAGACGCTGCTGGTCTGGTGGG 523 Query 131128 ATTCCTTCTTTGTC 131141 || || || || || Sbjct 522 ATGCCCTCCTTATC 509 >seq171037 Length=1136 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || || || ||||| || |||||| | || || ||| ||||| || || || Sbjct 985 GTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCG 926 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || | ||||| || |||||||| || || ||||||||||| || |||||| ||| Sbjct 925 GCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTG 866 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | ||||| || || | || |||| || | |||| || || || || |||||| Sbjct 865 ATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTT 806 Query 131218 TTTACGAAAATCTGCATG 131235 || || |||||||||||| Sbjct 805 TTAACAAAAATCTGCATG 788 >seq32333 Length=4216 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || || || ||||| || |||||| | || || ||| ||||| || || || Sbjct 3791 GTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCG 3850 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || | ||||| || |||||||| || || ||||||||||| || |||||| ||| Sbjct 3851 GCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTG 3910 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | ||||| || || | || |||| || | |||| || || || || |||||| Sbjct 3911 ATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTT 3970 Query 131218 TTTACGAAAATCTGCATG 131235 || || |||||||||||| Sbjct 3971 TTAACAAAAATCTGCATG 3988 >seq295945 Length=561 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| ||||| ||||| || | ||||| |||||||||||| ||||||||||| ||| Sbjct 97 CCACCACGCAAGCGCAGGACAAGATGTAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAA 38 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCG 131100 | |||||| |||||| || ||||| |||||| Sbjct 37 AGGGTGCGTCCGTCCTCCAGTTGCTTTCCTGCG 5 >seq150668 Length=1318 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 46522 AATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAG 46581 ||||| ||||| |||||| | || || || |||||||||||||| ||||||||||| ||| Sbjct 1087 AATCCGTTTGATTTTATGGAAAATATATCTCTGGAGGGCAAAACCAATTTTTTCGAGAAG 1146 Query 46582 CGCGTCGGCGAGTA 46595 ||||| ||||| || Sbjct 1147 CGCGTTGGCGAATA 1160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470146001176320