Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq157544 118 1e-21
seq110960 107 2e-18
seq75644 100 3e-16
seq256849 98.7 9e-16
seq171037 91.5 1e-13
seq32333 91.5 1e-13
seq295945 87.8 2e-12
seq150668 84.2 2e-11
>seq157544
Length=1252
Score = 118 bits (130), Expect = 1e-21
Identities = 169/234 (72%), Gaps = 3/234 (1%)
Strand=Plus/Minus
Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078
||| || || | ||||| || || ||||||||||||||||| || || |||||
Sbjct 1248 ACGGAGGACAAGATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACC 1189
Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138
||||||||||| |||||||| | |||| ||||||||| ||||| ||||| || || ||
Sbjct 1188 ATCCTCTAGCTGTTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTT 1129
Query 131139 GTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAA 131197
|| ||| ||| || || | | ||| | |||||| | ||||| | |||| || |
Sbjct 1128 ATC-CTGAATTTTAGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGA 1070
Query 131198 CGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT-GACTTATTTTATTCCT 131250
|| || || || || || |||||||| || ||||| | ||||| |||| ||
Sbjct 1069 TAGTCTTTCCAGTAAGGGTCTTTACGAATATTTGCATCGTTTTATTCTATTTCT 1016
>seq110960
Length=1818
Score = 107 bits (118), Expect = 2e-18
Identities = 305/460 (66%), Gaps = 19/460 (4%)
Strand=Plus/Plus
Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203
|| || ||||||||||| | |||||||| | || || ||||| ||||| ||||||
Sbjct 781 ACGTTTGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGT 840
Query 46204 TTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263
||||| | || |||| | || | ||| | ||||| ||| |||| || |||||
Sbjct 841 TTTGCGTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAGCAAT 900
Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTC-TCTACTATAACAC 46322
|| || || |||||||| ||||| || || |||||||| || | ||| | ||||
Sbjct 901 GAACTTATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAAACA- 959
Query 46323 TCGCGTGCACGACAAGCTTGCGCCCGA----CACCGTGCTGA-GC-ATGTTCAAGGAGGC 46376
| ||| || || |||||| | |||| | | || || |||||||||||
Sbjct 960 TATCGT----GAAAA-----AGCCCGATAAGGAACGTGTTTATGCTATATTCAAGGAGGC 1010
Query 46377 GGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAA 46436
||| || || |||| || |||| | || | |||| ||| | ||||||||
Sbjct 1011 ATTGGAGATAGAAAAGGCTTTCTTTAATGAGGCCTTACCCGTCAAACTGATTGGCATGAA 1070
Query 46437 CGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGC-AGCTTC 46495
| | |||||| |||| |||| ||||| || || || |||| || | |||||
Sbjct 1071 CTGTGATATGATGTGCCGCTACCTCGAATTTGTTGCCGATCGCTTGCT-GTACGAGCTTG 1129
Query 46496 ACCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGG 46555
| |||| || | || ||||| ||||| |||||| | || ||||| | |
Sbjct 1130 GTTACGAGAAGATTTGGAATGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCG 1189
Query 46556 AGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595
|||||||||| || || || || ||||| || || || ||
Sbjct 1190 AGGGCAAAACGAACTTCTTTGAGAAGCGTGTTGGGGAATA 1229
>seq75644
Length=2520
Score = 100 bits (110), Expect = 3e-16
Identities = 301/459 (66%), Gaps = 17/459 (4%)
Strand=Plus/Minus
Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203
|| || ||||||||||| | |||||||| | || || ||||| ||||| ||||||
Sbjct 1038 ACGTTTGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGT 979
Query 46204 TTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263
||||| | || |||| | || | ||| | ||||| ||| |||| || |||||
Sbjct 978 TTTGCGTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAGCAAT 919
Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTC-TCTACTATAACAC 46322
|| || || |||||||| ||||| || || |||||||| || | ||| | ||||
Sbjct 918 GAACTTATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAAACA- 860
Query 46323 TCGCGTGCACGACAAGCTTGCGCCCGA----CACCGTGCTGA-GC-ATGTTCAAGGAGGC 46376
| ||| || || |||||| | |||| | | || || |||||||||||
Sbjct 859 TATCGT----GAAAA-----AGCCCGATAAGGAACGTGTTTATGCTATATTCAAGGAGGC 809
Query 46377 GGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAA 46436
||| || || |||| || |||| | || | |||| ||| | ||||||||
Sbjct 808 ATTGGAGATAGAAAAGGCTTTCTTTAATGAGGCCTTACCCGTAAAACTGATTGGCATGAA 749
Query 46437 CGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCA 46496
| | |||||| ||| |||| ||||| || || || |||| |||||
Sbjct 748 CTGTGATATGATGTGCCGTTACCTCGAATTTGTTGCCGATCGCTTGCTATACGAGCTTGG 689
Query 46497 CCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGA 46556
| |||| || | || ||||| ||||| |||||| | || ||||| | ||
Sbjct 688 TTACGAGAAGATTTGGAATGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGA 629
Query 46557 GGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595
||||||||| || || || || ||||| || || || ||
Sbjct 628 GGGCAAAACAAACTTCTTTGAGAAGCGTGTTGGGGAATA 590
>seq256849
Length=689
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| || || | |||| || || ||||||||||||||||| || |
Sbjct 642 CCACCTCGGAGACGGAGGACAAGGTGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGAC 583
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| |||||||||||||||||||| | |||| |||||||||||| || |||
Sbjct 582 AAAGTGCGACCATCCTCTAGCTGCTTGCCTGCAAAAATTAGACGCTGCTGGTCTGGTGGG 523
Query 131128 ATTCCTTCTTTGTC 131141
|| || || || ||
Sbjct 522 ATGCCCTCCTTATC 509
>seq171037
Length=1136
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097
|| || || || ||||| || |||||| | || || ||| ||||| || || ||
Sbjct 985 GTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCG 926
Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157
|| | ||||| || |||||||| || || ||||||||||| || |||||| |||
Sbjct 925 GCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTG 866
Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217
| | ||||| || || | || |||| || | |||| || || || || ||||||
Sbjct 865 ATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTT 806
Query 131218 TTTACGAAAATCTGCATG 131235
|| || ||||||||||||
Sbjct 805 TTAACAAAAATCTGCATG 788
>seq32333
Length=4216
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097
|| || || || ||||| || |||||| | || || ||| ||||| || || ||
Sbjct 3791 GTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCG 3850
Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157
|| | ||||| || |||||||| || || ||||||||||| || |||||| |||
Sbjct 3851 GCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTG 3910
Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217
| | ||||| || || | || |||| || | |||| || || || || ||||||
Sbjct 3911 ATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTT 3970
Query 131218 TTTACGAAAATCTGCATG 131235
|| || ||||||||||||
Sbjct 3971 TTAACAAAAATCTGCATG 3988
>seq295945
Length=561
Score = 87.8 bits (96), Expect = 2e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| ||||| ||||| || | ||||| |||||||||||| ||||||||||| |||
Sbjct 97 CCACCACGCAAGCGCAGGACAAGATGTAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAA 38
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCG 131100
| |||||| |||||| || ||||| ||||||
Sbjct 37 AGGGTGCGTCCGTCCTCCAGTTGCTTTCCTGCG 5
>seq150668
Length=1318
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 46522 AATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAG 46581
||||| ||||| |||||| | || || || |||||||||||||| ||||||||||| |||
Sbjct 1087 AATCCGTTTGATTTTATGGAAAATATATCTCTGGAGGGCAAAACCAATTTTTTCGAGAAG 1146
Query 46582 CGCGTCGGCGAGTA 46595
||||| ||||| ||
Sbjct 1147 CGCGTTGGCGAATA 1160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 470146001176320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |